RCSB PDB Mobile: iOS and Android mobile apps to provide data access and visualization to the RCSB Protein Data Bank

被引:9
|
作者
Quinn, Gregory B. [1 ]
Bi, Chunxiao [1 ]
Christie, Cole H. [1 ]
Pang, Kyle [1 ]
Prlic, Andreas [1 ]
Nakane, Takanori [2 ]
Zardecki, Christine [3 ]
Voigt, Maria [3 ]
Berman, Helen M. [3 ]
Bourne, Philip E. [1 ,4 ]
Rose, Peter W. [1 ]
机构
[1] Univ Calif San Diego, San Diego Supercomp Ctr, RCSB Prot Data Bank, La Jolla, CA 92093 USA
[2] Kyoto Univ, Grad Sch Med, Sakyo Ward, Kyoto 6068501, Japan
[3] Rutgers State Univ, Ctr Integrat Prote Res, RCSB Prot Data Bank, Piscataway, NJ 08854 USA
[4] Univ Calif San Diego, Skaggs Sch Pharm & Pharmaceut Sci, La Jolla, CA 92093 USA
基金
美国国家科学基金会; 美国国家卫生研究院;
关键词
RESOURCES;
D O I
10.1093/bioinformatics/btu596
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
A Summary: The Research Collaboratory for Structural Bioinformatics Protein Data Bank (RCSB PDB) resource provides tools for query, analysis and visualization of the 3D structures in the PDB archive. As the mobile Web is starting to surpass desktop and laptop usage, scientists and educators are beginning to integrate mobile devices into their research and teaching. In response, we have developed the RCSB PDB Mobile app for the iOS and Android mobile platforms to enable fast and convenient access to RCSB PDB data and services. Using the app, users from the general public to expert researchers can quickly search and visualize biomolecules, and add personal annotations via the RCSB PDB's integrated MyPDB service.
引用
收藏
页码:126 / 127
页数:2
相关论文
共 50 条
  • [31] RCSB Protein Data Bank: Structural biology views for basic and applied research
    Westbrook, John
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2017, 73 : A308 - A308
  • [32] Economics of Biodata Archiving Viewed Through the Lens of the RCSB Protein Data Bank
    Burley, Stephen K.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2023, 79 : A187 - A187
  • [33] RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D
    Burley, Stephen K.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2021, 77 : C664 - C664
  • [34] RCSB Protein Data Bank (RCSB.org): delivery of experimentally-determined PDB structures alongside one million computed structure models of proteins from artificial intelligence/machine learning
    Burley, Stephen K.
    Bhikadiya, Charmi
    Bi, Chunxiao
    Bittrich, Sebastian
    Chao, Henry
    Chen, Li
    Craig, Paul A.
    Crichlow, Gregg, V
    Dalenberg, Kenneth
    Duarte, Jose M.
    Dutta, Shuchismita
    Fayazi, Maryam
    Feng, Zukang
    Flatt, Justin W.
    Ganesan, Sai
    Ghosh, Sutapa
    Goodsell, David S.
    Green, Rachel Kramer
    Guranovic, Vladimir
    Henry, Jeremy
    Hudson, Brian P.
    Khokhriakov, Igor
    Lawson, Catherine L.
    Liang, Yuhe
    Lowe, Robert
    Peisach, Ezra
    Persikova, Irina
    Piehl, Dennis W.
    Rose, Yana
    Sali, Andrej
    Segura, Joan
    Sekharan, Monica
    Shao, Chenghua
    Vallat, Brinda
    Voigt, Maria
    Webb, Ben
    Westbrook, John D.
    Whetstone, Shamara
    Young, Jasmine Y.
    Zalevsky, Arthur
    Zardecki, Christine
    NUCLEIC ACIDS RESEARCH, 2023, 51 (D1) : D488 - D508
  • [35] RCSB Protein Data Bank: Celebrating 50 years of the PDB with new tools for understanding and visualizing biological macromolecules in 3D
    Burley, Stephen K.
    Bhikadiya, Charmi
    Bi, Chunxiao
    Bittrich, Sebastian
    Chen, Li
    Crichlow, Gregg, V
    Duarte, Jose M.
    Dutta, Shuchismita
    Fayazi, Maryam
    Feng, Zukang
    Flatt, Justin W.
    Ganesan, Sai J.
    Goodsell, David S.
    Ghosh, Sutapa
    Green, Rachel Kramer
    Guranovic, Vladimir
    Henry, Jeremy
    Hudson, Brian P.
    Lawson, Catherine L.
    Liang, Yuhe
    Lowe, Robert
    Peisach, Ezra
    Persikova, Irina
    Piehl, Dennis W.
    Rose, Yana
    Sali, Andrej
    Segura, Joan
    Sekharan, Monica
    Shao, Chenghua
    Vallat, Brinda
    Voigt, Maria
    Westbrook, John D.
    Whetstone, Shamara
    Young, Jasmine Y.
    Zardecki, Christine
    PROTEIN SCIENCE, 2022, 31 (01) : 187 - 208
  • [36] The RCSB Protein Data Bank: views of structural biology for basic and applied research and education
    Rose, Peter W.
    Prlic, Andreas
    Bi, Chunxiao
    Bluhm, Wolfgang F.
    Christie, Cole H.
    Dutta, Shuchismita
    Green, Rachel Kramer
    Goodsell, David S.
    Westbrook, John D.
    Woo, Jesse
    Young, Jasmine
    Zardecki, Christine
    Berman, Helen M.
    Bourne, Philip E.
    Burley, Stephen K.
    NUCLEIC ACIDS RESEARCH, 2015, 43 (D1) : D345 - D356
  • [37] The RCSB protein data bank: integrative view of protein, gene and 3D structural information
    Rose, Peter W.
    Prlic, Andreas
    Altunkaya, Ali
    Bi, Chunxiao
    Bradley, Anthony R.
    Christie, Cole H.
    Di Costanzo, Luigi
    Duarte, Jose M.
    Dutta, Shuchismita
    Feng, Zukang
    Green, Rachel Kramer
    Goodsell, David S.
    Hudson, Brian
    Kalro, Tara
    Lowe, Robert
    Peisach, Ezra
    Randle, Christopher
    Rose, Alexander S.
    Shao, Chenghua
    Tao, Yi-Ping
    Valasatava, Yana
    Voigt, Maria
    Westbrook, John D.
    Woo, Jesse
    Yang, Huangwang
    Young, Jasmine Y.
    Zardecki, Christine
    Berman, Helen M.
    Burley, Stephen K.
    NUCLEIC ACIDS RESEARCH, 2017, 45 (D1) : D271 - D281
  • [38] RCSB Protein Data bank: Tools for visualizing and understanding biological macromolecules in 3D
    Burley, Stephen K.
    Bhikadiya, Charmi
    Bi, Chunxiao
    Bittrich, Sebastian
    Chao, Henry
    Chen, Li
    Craig, Paul A.
    Crichlow, Gregg, V
    Dalenberg, Kenneth
    Duarte, Jose M.
    Dutta, Shuchismita
    Fayazi, Maryam
    Feng, Zukang
    Flatt, Justin W.
    Ganesan, Sai
    Ghosh, Sutapa
    Goodsell, David S.
    Green, Rachel Kramer
    Guranovic, Vladimir
    Henry, Jeremy
    Hudson, Brian P.
    Lawson, Catherine L.
    Liang, Yuhe
    Lowe, Robert
    Peisach, Ezra
    Persikova, Irina
    Piehl, Dennis W.
    Rose, Yana
    Sali, Andrej
    Segura, Joan
    Sekharan, Monica
    Shao, Chenghua
    Vallat, Brinda
    Voigt, Maria
    Webb, Ben
    Westbrook, John D.
    Whetstone, Shamara
    Young, Jasmine Y.
    Zalevsky, Arthur
    Zardecki, Christine
    PROTEIN SCIENCE, 2022, 31 (12) : e4482
  • [39] RCSB Protein Data Bank: A Resource for Chemical, Biochemical, and Structural Explorations of Large and Small Biomolecules
    Zardecki, Christine
    Dutta, Shuchismita
    Goodsell, David S.
    Voigt, Maria
    Burley, Stephen K.
    JOURNAL OF CHEMICAL EDUCATION, 2016, 93 (03) : 569 - 575
  • [40] The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema
    Deshpande, N
    Addess, KJ
    Bluhm, WF
    Merino-Ott, JC
    Townsend-Merino, W
    Zhang, Q
    Knezevich, C
    Xie, L
    Chen, L
    Feng, ZK
    Green, RK
    Flippen-Anderson, JL
    Westbrook, J
    Berman, HM
    Bourne, PE
    NUCLEIC ACIDS RESEARCH, 2005, 33 : D233 - D237