Applications of open-source software ROAST in clinical studies: A review

被引:2
|
作者
Nasimova, Mohigul [1 ]
Huang, Yu [1 ,2 ]
机构
[1] City Univ New York, Dept Biomed Engn, City Coll, New York, NY 10031 USA
[2] Mem Sloan Kettering Canc Ctr, Dept Radiol, New York, NY 10065 USA
基金
美国国家卫生研究院;
关键词
DIRECT-CURRENT STIMULATION; TRANSCRANIAL ELECTRICAL-STIMULATION; DISORDER; PAIN;
D O I
10.1016/j.brs.2022.07.003
中图分类号
R74 [神经病学与精神病学];
学科分类号
摘要
Background: Transcranial electrical stimulation (TES) is broadly investigated as a therapeutic technique for a wide range of neurological disorders. The electric fields induced by TES in the brain can be estimated by computational models. A realistic and volumetric approach to simulate TES (ROAST) has been recently released as an open-source software package and has been widely used in TES research and its clinical applications. Rigor and reproducibility of TES studies have recently become a concern, especially in the context of computational modeling. Methods: Here we reviewed 94 clinical TES studies that leveraged ROAST for computational modeling. When reviewing each study, we pay attention to details related to the rigor and reproducibility as defined by the locations of stimulation electrodes and the dose of stimulating current. Specifically, we compared across studies the electrode montages, stimulated brain areas, achieved electric field strength, and the relations between modeled electric field and clinical outcomes. Results: We found that over 1800 individual heads have been modeled by ROAST for more than 30 different clinical applications. Similar electric field intensities were found to be reproducible by ROAST across different studies at the same brain area under same or similar stimulation montages. Conclusion: This article reviews the use cases of ROAST and provides an overview of how ROAST has been leveraged to enhance the rigor and reproducibility of TES research and its applications. (C) 2022 Published by Elsevier Inc.
引用
收藏
页码:1002 / 1010
页数:9
相关论文
共 50 条
  • [31] Unlocked: embedding open-source software
    Webb, W
    [J]. EDN, 2003, 48 (11) : 40 - +
  • [32] Teaching Cryptography with Open-Source Software
    McAndrew, Alasdair
    [J]. SIGCSE'08: PROCEEDINGS OF THE 39TH ACM TECHNICAL SYMPOSIUM ON COMPUTER SCIENCE EDUCATION, 2008, : 325 - 329
  • [33] goGPS: open-source MATLAB software
    Antonio M. Herrera
    Hendy F. Suhandri
    Eugenio Realini
    Mirko Reguzzoni
    M. Clara de Lacy
    [J]. GPS Solutions, 2016, 20 : 595 - 603
  • [34] Open-source software: not quite endsville
    Stahl, MT
    [J]. DRUG DISCOVERY TODAY, 2005, 10 (03) : 219 - 222
  • [35] Greenstone: Open-source DL software
    Witten, IH
    Bainbridge, D
    Boddie, S
    [J]. COMMUNICATIONS OF THE ACM, 2001, 44 (05) : 47 - 47
  • [36] Open-source software for SEM metrology
    Mochi, Iacopo
    Vockenhuber, Michaela
    Allenet, Timothee
    Ekinci, Yasin
    [J]. PHOTOMASK TECHNOLOGY 2020, 2020, 11518
  • [37] Open-source software for geospatial analysis
    Isamar M. Cortés
    [J]. Nature Reviews Earth & Environment, 2023, 4 : 143 - 143
  • [38] Characterizing Commits in Open-Source Software
    Ferreira, Mivian M.
    Goncalves, Diego Santos
    Bigonha, Mariza A. S.
    Ferreira, Kecia A. M.
    [J]. PROCEEDINGS OF THE 21TH BRAZILIAN SYMPOSIUM ON SOFTWARE QUALITY, SBOS 2022, 2022,
  • [40] Who Chooses Open-Source Software?
    Lemley, Mark A.
    Shafir, Ziv
    [J]. UNIVERSITY OF CHICAGO LAW REVIEW, 2011, 78 (01): : 139 - 164