PRIDEViewer: A novel user-friendly interface to visualize PRIDE XML files

被引:4
|
作者
Alberto Medina-Aunon, J. [1 ]
Carazo, Jose M. [2 ]
Pablo Albar, Juan [1 ]
机构
[1] CSIC, CNB, Prote Facil, Madrid 28049, Spain
[2] CSIC, CNB, Biocomp Unit, Madrid 28049, Spain
关键词
PROTEOMICS; IDENTIFICATIONS; PROTEIN;
D O I
10.1002/pmic.201000448
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Current standardization initiatives have greatly contributed to share the information derived by proteomics experiments. One of these initiatives is the XML-based repository PRIDE (PRoteomics IDEntification database), although an XML-based document does not appear to present a user-friendly view at the first glance. PRIDEViewer is a novel Java-based application that presents the information available in a PRIDE XML file in a user-friendly manner, facilitating the interaction among end users as well as the understanding and evaluation of the compiled information. PRIDEViewer is freely available at: http://proteo.cnb.csic.es/prideviewer/.
引用
收藏
页码:334 / 337
页数:4
相关论文
共 50 条
  • [21] A User-Friendly Interface for Rules Composition in Intelligent Environments
    Bonin, Dario
    Corno, Fulvio
    De Russis, Luigi
    AMBIENT INTELLIGENCE: SOFTWARE AND APPLICATIONS, 2011, 92 : 213 - 217
  • [22] PROPOSAL FOR USER-FRIENDLY SOFTWARE INTERFACE FOR BOOKING RESERVATIONS
    FEIGUSCH, G
    DOMINICI, R
    MEZZETTI, M
    AMORE, F
    ELETTROTECNICA, 1990, 77 (03): : 211 - 216
  • [23] Gravity forward modelling software with user-friendly interface
    Chen, Wenjin
    Tan, Xiaolong
    Tenzer, Robert
    GEOPHYSICAL PROSPECTING, 2024, 72 (08) : 2994 - 3007
  • [24] PastView: a user-friendly interface to explore ancestral scenarios
    Chevenet, Francois
    Castel, Guillaume
    Jousselin, Emmanuelle
    Gascuel, Olivier
    BMC EVOLUTIONARY BIOLOGY, 2019, 19 (01)
  • [25] PastView: a user-friendly interface to explore ancestral scenarios
    François Chevenet
    Guillaume Castel
    Emmanuelle Jousselin
    Olivier Gascuel
    BMC Evolutionary Biology, 19
  • [26] A USER-FRIENDLY HYPERCARD INTERFACE FOR HUMAN LINKAGE ANALYSIS
    NICHOLS, BE
    SHEFFIELD, VC
    STONE, EM
    COMPUTER APPLICATIONS IN THE BIOSCIENCES, 1993, 9 (06): : 757 - 759
  • [27] A development of user-friendly graphical interface for a blanket simulator
    Lee, Young-Seok
    Yoon, Seok-Heun
    Han, Jung-Hoon
    FUSION ENGINEERING AND DESIGN, 2010, 85 (10-12) : 1957 - 1965
  • [28] DESIGNING A USER-FRIENDLY INTERFACE FOR A DECISION SUPPORT SYSTEM
    BIDGOLI, H
    INFORMATION AGE, 1990, 12 (03): : 148 - 154
  • [29] Transliteration of Indic Languages to Kannada with a User-Friendly Interface
    Ramakrishnan, A. G.
    Rao, Shashank S.
    Sequiera, Royal Denzil
    Kumar, Shiva H. R.
    2015 IEEE INTERNATIONAL ADVANCE COMPUTING CONFERENCE (IACC), 2015, : 998 - 1001
  • [30] Transformation Optical User-Friendly Interface for Designing Metamaterials
    Jarutatsanangkoon, Pasit
    Pijitrojana, Wanchai
    ENGINEERING JOURNAL-THAILAND, 2019, 23 (06): : 225 - 237