The space between us: Modeling spatial heterogeneity in synthetic microbial consortia dynamics

被引:1
|
作者
Godin, Ryan [1 ,2 ,3 ,4 ]
Karamched, Bhargav R. [5 ,6 ,7 ]
Ryan, Shawn D. [3 ,4 ]
机构
[1] Iowa State Univ, Dept Chem & Biol Engn, Ames, IA USA
[2] Cleveland State Univ, Dept Biol Geol & Environm Sci, Cleveland, OH USA
[3] Cleveland State Univ, Dept Math & Stat, Cleveland, OH 44115 USA
[4] Cleveland State Univ, Ctr Appl Data Anal & Modeling, Cleveland, OH 44115 USA
[5] Florida State Univ, Dept Math, Tallahassee, FL 32306 USA
[6] Florida State Univ, Inst Mol Biophys, Tallahassee, FL 32306 USA
[7] Florida State Univ, Program Neurosci, Tallahassee, FL 32306 USA
来源
BIOPHYSICAL REPORTS | 2022年 / 2卷 / 04期
关键词
MULTICELLULAR FEEDBACK-CONTROL; BIOFILM FORMATION; DIFFUSION; OSCILLATIONS;
D O I
10.1016/j.bpr.2022.100085
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
A central endeavor in bioengineering concerns the construction of multistrain microbial consortia with desired properties. Typically, a gene network is partitioned between strains, and strains communicate via quorum sensing, allowing for complex behaviors. Yet a fundamental question of how emergent spatiotemporal patterning in multistrain microbial consortia affects consortial dynamics is not understood well. Here, we propose a computationally tractable and straightforward modeling framework that explicitly allows linking spatiotemporal patterning to consortial dynamics. We validate our model against previously published results and make predictions of how spatial heterogeneity impacts interstrain communication. By enabling the investigation of spatial patterns effects on microbial dynamics, our modeling framework informs experimentalists, helps advance the understanding of complex microbial systems, and supports the development of applications involving them.
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页数:9
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