Accelerating ring-polymer molecular dynamics with parallel-replica dynamics

被引:1
|
作者
Lu, Chun-Yaung [1 ]
Perez, Danny [2 ]
Voter, Arthur F. [2 ]
机构
[1] Stanford Univ, Dept Energy Resources Engn, Stanford, CA 94305 USA
[2] Los Alamos Natl Lab, Theoret Div, Los Alamos, NM 87545 USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2016年 / 144卷 / 24期
基金
美国能源部;
关键词
STATISTICAL-MECHANICS; HELIUM; HYDROGEN; IRON; EMBRITTLEMENT;
D O I
10.1063/1.4954311
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Nuclear quantum effects are important for systems containing light elements, and the effects are more prominent in the low temperature regime where the dynamics also becomes sluggish. We show that parallel replica (ParRep) dynamics, an accelerated molecular dynamics approach for infrequent-event systems, can be effectively combined with ring-polymer molecular dynamics, a semiclassical trajectory approach that gives a good approximation to zero-point and tunneling effects in activated escape processes. The resulting RP-ParRep method is a powerful tool for reaching long time scales in complex infrequent-event systems where quantum dynamics are important. Two illustrative examples, symmetric Eckart barrier crossing and interstitial helium diffusion in Fe and Fe-Cr alloy, are presented to demonstrate the accuracy and long-time scale capability of this approach. Published by AIP Publishing.
引用
收藏
页数:11
相关论文
共 50 条
  • [41] Long-time molecular dynamics simulations on massively parallel platforms: A comparison of parallel replica dynamics and parallel trajectory splicing
    Perez, Danny
    Huang, Rao
    Voter, Arthur F.
    JOURNAL OF MATERIALS RESEARCH, 2018, 33 (07) : 813 - 822
  • [42] Long-time molecular dynamics simulations on massively parallel platforms: A comparison of parallel replica dynamics and parallel trajectory splicing
    Danny Perez
    Rao Huang
    Arthur F. Voter
    Journal of Materials Research, 2018, 33 : 813 - 822
  • [43] NUMERICAL ANALYSIS OF PARALLEL REPLICA DYNAMICS
    Simpson, Gideon
    Luskin, Mitchell
    ESAIM-MATHEMATICAL MODELLING AND NUMERICAL ANALYSIS-MODELISATION MATHEMATIQUE ET ANALYSE NUMERIQUE, 2013, 47 (05): : 1287 - 1314
  • [44] A mathematical formalization of the parallel replica dynamics
    Le Bris, Claude
    Lelievre, Tony
    Luskin, Mitchell
    Perez, Danny
    MONTE CARLO METHODS AND APPLICATIONS, 2012, 18 (02): : 119 - 146
  • [45] Ring Polymer Molecular Dynamics with Electronic Transitions
    Zhao, Ruji
    You, Peiwei
    Meng, Sheng
    PHYSICAL REVIEW LETTERS, 2023, 130 (16)
  • [46] Ring polymer molecular dynamics with surface hopping
    Shushkov, Philip
    Li, Richard
    Tully, John C.
    JOURNAL OF CHEMICAL PHYSICS, 2012, 137 (22):
  • [47] Salsa: Scalable asynchronous replica exchange for parallel molecular dynamics applications
    Zhang, Li
    Parashar, Manish
    Gallicchio, Emilio
    Levy, Ronald M.
    2006 INTERNATIONAL CONFERENCE ON PARALLEL PROCESSING, PROCEEDINGS, 2006, : 127 - 134
  • [48] Replica Exchange Molecular Dynamics
    Peng, Cheng
    Wu, Leyun
    Xu, Zhijian
    Zhu, Weiliang
    PROGRESS IN CHEMISTRY, 2022, 34 (02) : 384 - 396
  • [49] Path Integrals for Nonadiabatic Dynamics: Multistate Ring Polymer Molecular Dynamics
    Ananth, Nandini
    ANNUAL REVIEW OF PHYSICAL CHEMISTRY, 2022, 73 : 299 - 322
  • [50] Quantum ring-polymer contraction method: Including nuclear quantum effects at no additional computational cost in comparison to ab initio molecular dynamics
    John, Christopher
    Spura, Thomas
    Habershon, Scott
    Kuhne, Thomas D.
    PHYSICAL REVIEW E, 2016, 93 (04)