Importance of proximal hydrogen bonds in haem proteins

被引:31
|
作者
Jensen, KP [1 ]
Ryde, U [1 ]
机构
[1] Lund Univ, Ctr Chem, Dept Theoret Chem, S-22100 Lund, Sweden
关键词
D O I
10.1080/0026897031000109383
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We have used the density functional B3LYP method to study the effect of hydrogen bonds from the histidine ligand in various haem proteins to carboxyl groups or to the carbonyl backbone. Hydrogen bonds to carbonyl groups( encountered in globins and cytochromes, for example) have a small influence on the geometry and properties of the haem site. However, hydrogen bonds to a carboxyl group ( encountered in peroxidases and haem oxidase) may have a profound effect. The results indicate that in the Fe3+ state, this leads to a deprotonation of the histidine ligand, whereas in the Fe2+ state, the proton involved in the hydrogen bond may reside on either histidine or the carboxylate group, depending on the detailed structure of the surroundings. If the histidine is deprotonated, the axial Fe - N bond length decreases by 0.15 Angstrom, whereas the equatorial bond lengths increase. Moreover, the charge on iron and histidine is reduced, as is the spin density on iron. Most importantly, the energy difference between the high and intermediate spin states changes so that whereas the two spin states are degenerate in the Fe2+ state for the protonated histidine, they are degenerate for the Fe3+ state when it is deprotonated. This may facilitate the spin-forbidden binding of dioxygen and peroxide substrates, which takes place for the Fe2+ state in globins but in the Fe3+ state in peroxidases. The reduction potential of the haem group decreases when it hydrogen-bonds to a negatively charged group. The inner-sphere reorganization energy of the Fe2+/Fe3+ transition in a five-coordinate haem complex is similar to 30 kJ mol(-1), except when the histidine ligand is deprotonated without any hydrogen-bond interaction.
引用
收藏
页码:2003 / 2018
页数:16
相关论文
共 50 条
  • [41] Hydrogen bonds in Zif268 proteins - a theoretical perspective
    Palanivel, Umadevi
    Lakshmipathi, Senthilkumar
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2016, 34 (08): : 1607 - 1624
  • [42] ELECTRONIC ENERGY TRANSFER IN HAEM PROTEINS
    WEBER, G
    TEALE, FJW
    DISCUSSIONS OF THE FARADAY SOCIETY, 1959, (27): : 134 - 141
  • [43] Counting peptide-water hydrogen bonds in unfolded proteins
    Gong, Haipeng
    Porter, Lauren L.
    Rose, George D.
    PROTEIN SCIENCE, 2011, 20 (02) : 417 - 427
  • [44] THE EFFECT OF DEUTERIUM SUBSTITUTION ON HYDROGEN-BONDS IN REDOX PROTEINS
    SHERIDAN, RP
    KNIGHT, ET
    ALLEN, LC
    BIOPOLYMERS, 1984, 23 (02) : 195 - 200
  • [45] Close pairs of carboxylates: a possibility of multicenter hydrogen bonds in proteins
    Torshin, IY
    Harrison, RW
    Weber, IT
    PROTEIN ENGINEERING, 2003, 16 (03): : 201 - 207
  • [46] Effect of proximal electronegative functionalities on the energetics of strained hydrogen bonds: A computational investigation
    Ganguly, Aniruddha
    COMPUTATIONAL AND THEORETICAL CHEMISTRY, 2022, 1217
  • [47] Oxygen-binding haem proteins
    Wilson, Michael T.
    Reeder, Brandon J.
    EXPERIMENTAL PHYSIOLOGY, 2008, 93 (01) : 128 - 132
  • [48] ELECTRONIC ENERGY TRANSFER IN HAEM PROTEINS
    WEBER, G
    TEALE, FJW
    ANGEWANDTE CHEMIE-INTERNATIONAL EDITION, 1959, 71 (12) : 408 - 409
  • [49] Entamoeba histolytica secretes two haem-binding proteins to scavenge haem
    Cruz-Castaneda, Areli
    Lopez-Casamichana, Mavil
    Olivares-Trejo, Jose J.
    BIOCHEMICAL JOURNAL, 2011, 434 : 105 - 111
  • [50] Importance of specific hydrogen bonds of archaeal rhodopsins for the binding to the transducer protein
    Sudo, Y
    Yamabi, M
    Kato, S
    Hasegawa, C
    Iwamoto, M
    Shimono, K
    Kamo, N
    JOURNAL OF MOLECULAR BIOLOGY, 2006, 357 (04) : 1274 - 1282