VariScan: Analysis of evolutionary patterns from large-scale DNA sequence polymorphism data

被引:104
|
作者
Vilella, AJ [1 ]
Blanco-Garcia, A [1 ]
Hutter, S [1 ]
Rozas, J [1 ]
机构
[1] Univ Barcelona, Fac Biol, Dept Genet, E-08028 Barcelona, Spain
关键词
D O I
10.1093/bioinformatics/bti403
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
VeriScan is a software package for the analysis of DNA sequence polymorphisms at the whole genome scale. Among other features, the software (1) can conduct many population genetic analyses; (2) incorporates a multiresolution wavelet transform-based method that allows capturing relevant information from DNA polymorphism data; (3) facilitates the visualization of the results in the most commonly used genome browsers.
引用
收藏
页码:2791 / 2793
页数:3
相关论文
共 50 条
  • [21] Large-scale DNA sequence assembly by using computing grid
    Fang, Xiaoyong
    Luo, Zhigang
    Wang, Zhenghua
    Ding, Fan
    GCC 2006: FIFTH INTERNATIONAL CONFERENCE ON GRID AND COOPERATIVE COMPUTING WORKSHOPS, PROCEEDINGS, 2006, : 397 - +
  • [22] Large-scale analysis of the PAC domain structure of arogenate dehydratases reveals their evolutionary patterns in angiosperms
    Li, Jie
    Guan, Ju
    Zhong, Shengfu
    Chen, Chen
    Tan, Feiquan
    Luo, Peigao
    INTERNATIONAL JOURNAL OF BIOLOGICAL MACROMOLECULES, 2024, 278
  • [23] Analysis of Large-Scale Experimental Data from Wireless Networks
    Seidel, Stephen A.
    Mehari, Michael T.
    Colbourn, Charles J.
    De Poorter, Eli
    Moerman, Ingrid
    Syrotiuk, Violet R.
    IEEE INFOCOM 2018 - IEEE CONFERENCE ON COMPUTER COMMUNICATIONS WORKSHOPS (INFOCOM WKSHPS), 2018, : 535 - 540
  • [24] Large-scale sequence analysis of avian influenza isolates
    Obenauer, JC
    Denson, J
    Mehta, PK
    Su, XP
    Mukatira, S
    Finkelstein, DB
    Xu, XQ
    Wang, JH
    Ma, J
    Fan, YP
    Rakestraw, KM
    Webster, RG
    Hoffmann, E
    Krauss, S
    Zheng, J
    Zhang, ZW
    Naeve, CW
    SCIENCE, 2006, 311 (5767) : 1576 - 1580
  • [25] An integrated web interface for large-scale characterization of sequence data
    Cheung K.-H.
    Kumar A.
    Snyder M.
    Miller P.
    Functional & Integrative Genomics, 2000, 1 (1) : 70 - 75
  • [26] Large-scale generation and analysis of expressed sequence tags from porcine ovary
    Jiang, H
    Whitworth, KM
    Bivens, NJ
    Ries, JE
    Woods, RJ
    Forrester, LJ
    Springer, GK
    Mathialagan, N
    Agca, C
    Prather, RS
    Lucy, MC
    BIOLOGY OF REPRODUCTION, 2004, 71 (06) : 1991 - 2002
  • [27] Insights into the evolutionary process from patterns of DNA sequence variability
    Aquadro, CF
    CURRENT OPINION IN GENETICS & DEVELOPMENT, 1997, 7 (06) : 835 - 840
  • [28] Large-Scale Pairwise Sequence Alignments on a Large-Scale GPU Cluster
    Savran, Ibrahim
    Gao, Yang
    Bakos, Jason D.
    IEEE DESIGN & TEST, 2014, 31 (01) : 51 - 61
  • [29] Sparse cluster analysis of large-scale discrete variables with application to single nucleotide polymorphism data
    Wu, Baolin
    JOURNAL OF APPLIED STATISTICS, 2013, 40 (02) : 358 - 367
  • [30] TranSeqAnnotator: large-scale analysis of transcriptomic data
    Menon, Ranjeeta
    Garg, Gagan
    Gasser, Robin B.
    Ranganathan, Shoba
    BMC BIOINFORMATICS, 2012, 13