Boosting joint models for longitudinal and time-to-event data

被引:13
|
作者
Waldmann, Elisabeth [1 ]
Taylor-Robinson, David [2 ]
Klein, Nadja [3 ,4 ]
Kneib, Thomas [3 ,4 ]
Pressler, Tania [5 ]
Schmid, Matthias [6 ]
Mayr, Andreas [1 ,6 ]
机构
[1] Friedrich Alexander Univ Erlangen Nurnberg FAU, Dept Med Informat Biometry & Epidemiol, Waldstr 6, D-91054 Erlangen, Germany
[2] Univ Liverpool, Farr Inst, Dept Publ Hlth & Policy, Liverpool L69 3GL, Merseyside, England
[3] Georg August Univ Gottingen, Chair Stat, Humboldtallee 3, D-37073 Gottingen, Germany
[4] Georg August Univ Gottingen, Chair Econometr, Humboldtallee 3, D-37073 Gottingen, Germany
[5] Rigshosp, Cyst Fibrosis Ctr, Copenhagen, Denmark
[6] Rhein Friedrich Wilhelms Univ Bonn, Dept Med Biometr Informat & Epidemiol, Sigmund Freud Str 25, D-53105 Bonn, Germany
关键词
Boosting; High-dimensional data; Joint modeling; Longitudinal models; Time-to-event analysis; Variable selection; VARIABLE SELECTION; R PACKAGE; ADDITIVE-MODELS; ALGORITHMS; EVOLUTION; SURVIVAL; OUTCOMES;
D O I
10.1002/bimj.201600158
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Joint models for longitudinal and time-to-event data have gained a lot of attention in the last few years as they are a helpful technique clinical studies where longitudinal outcomes are recorded alongside event times. Those two processes are often linked and the two outcomes should thus be modeled jointly in order to prevent the potential bias introduced by independent modeling. Commonly, joint models are estimated in likelihood-based expectation maximization or Bayesian approaches using frameworks where variable selection is problematic and that do not immediately work for high-dimensional data. In this paper, we propose a boosting algorithm tackling these challenges by being able to simultaneously estimate predictors for joint models and automatically select the most influential variables even in high-dimensional data situations. We analyze the performance of the new algorithm in a simulation study and apply it to the Danish cystic fibrosis registry that collects longitudinal lung function data on patients with cystic fibrosis together with data regarding the onset of pulmonary infections. This is the first approach to combine state-of-the art algorithms from the field of machine-learning with the model class of joint models, providing a fully data-driven mechanism to select variables and predictor effects in a unified framework of boosting joint models.
引用
收藏
页码:1104 / 1121
页数:18
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