Stiffness in stochastic chemically reacting systems: The implicit tau-leaping method

被引:279
|
作者
Rathinam, M [1 ]
Petzold, LR
Cao, Y
Gillespie, DT
机构
[1] Univ Maryland Baltimore Cty, Dept Math & Stat, Baltimore, MD 21250 USA
[2] Univ Calif Santa Barbara, Santa Barbara, CA 93106 USA
[3] Daniel T Gillespie Consulting, Castaic, CA USA
来源
JOURNAL OF CHEMICAL PHYSICS | 2003年 / 119卷 / 24期
关键词
D O I
10.1063/1.1627296
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
We show how stiffness manifests itself in the simulation of chemical reactions at both the continuous-deterministic level and the discrete-stochastic level. Existing discrete stochastic simulation methods, such as the stochastic simulation algorithm and the (explicit) tau-leaping method, are both exceedingly slow for such systems. We propose an implicit tau-leaping method that can take much larger time steps for many of these problems. (C) 2003 American Institute of Physics.
引用
收藏
页码:12784 / 12794
页数:11
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