Complete genome sequence of the marine Rhodococcus sp H-CA8f isolated from Comau fjord in Northern Patagonia, Chile

被引：10

作者：

Undabarrena, A. ^{[1
,2
]}

Salva-Serra, F. ^{[3
,4
,5
]}

Jaen-Luchoro, D. ^{[3
,4
,5
]}

Castro-Nallar, E. ^{[6
]}

Mendez, K. N. ^{[6
]}

Valencia, R. ^{[1
,2
]}

Ugalde, J. A. ^{[6
,7
]}

Moore, E. R. B. ^{[3
,4
,8
]}

Seeger, M. ^{[1
,2
]}

Camara, B. ^{[1
,2
]}

机构：

[1] Univ Tecn Federico Santa Marla, Lab Microbiol Mol & Biotecnol Ambiental, Dept Quim, Valparaiso, Chile

[2] Univ Tecn Federico Santa Marla, Ctr Biotecnol Daniel Alkalay Lowitt, Valparaiso, Chile

[3] Univ Gothenburg, Sahlgrenska Acad, Dept Infect Dis, Gothenburg, Sweden

[4] Univ Gothenburg, Ctr Antibiot Resistance Res CARe, Gothenburg, Sweden

[5] Univ Balear Islands, Dept Biol, Microbiol, Palma De Mallorca, Spain

[6] Univ Andres Bello, Ctr Bioinformat & Integrat Biol, Fac Ciencias Biol, Santiago, Chile

[7] uBiome Inc, San Francisco, CA USA

[8] CCUG, Gothenburg, Sweden

来源：

MARINE GENOMICS | 2018年 / 40卷

基金：

瑞典研究理事会;

关键词：

Rhodococcus; Marine actinobacteria; Comau fjord; Novel mega-plasmid; PacBio sequencing; FUNCTIONAL ANNOTATION; BIODEGRADATION; PROTEINS;

D O I：

10.1016/j.margen.2018.01.004

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Rhodococcus sp. H-CA8f was isolated from marine sediments obtained from the Comau fjord, located in Northern Chilean Patagonia. Whole-genome sequencing was achieved using PacBio RS II platform, comprising one closed, complete chromosome of 6,19 Mbp with a 62.45% G + C content. The chromosome harbours several metabolic pathways providing a wide catabolic potential, where the upper biphenyl route is described. Also, Rhodococcus sp. H-CA8f bears one linear mega-plasmid of 301 Kbp and 62.34% of G + C content, where genomic analyses demonstrated that it is constituted mostly by putative ORFs with unknown functions, representing a novel genetic feature. These genetic characteristics provide relevant insights regarding Chilean marine actinobacterial strains.

引用

页码：13 / 17

页数：5

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