Draft genome sequence of Fusicladium effusum, cause of pecan scab

被引：15

作者：

Bock, Clive H. ^{[1
]}

Chen, Chunxian ^{[1
]}

Yu, Fahong ^{[2
]}

Stevenson, Katherine L. ^{[3
]}

Wood, Bruce W. ^{[1
]}

机构：

[1] ARS, USDA, Southeastern Fruit & Tree Nut Res Lab, 21 Dunbar Rd, Byron, GA 31008 USA

[2] Univ Florida, Interdisciplinary Ctr Biotechnol Res, 2033 Mowry Rd, Gainesville, FL 32610 USA

[3] Univ Georgia, Dept Plant Pathol, 2360 Rainwater Rd, Tifton, GA 31793 USA

来源：

STANDARDS IN GENOMIC SCIENCES | 2016年 / 11卷

关键词：

Fusicladium effusum; Venturiacae; Fungal pathogen; Fungicide resistance; Genetic diversity; Pecan; Pecan scab; CLADOSPORIUM-CARYIGENUM; DIVERSITY;

D O I：

10.1186/s40793-016-0161-y

中图分类号：

Q3 [遗传学];

学科分类号：

071007 ; 090102 ;

摘要：

Pecan scab, caused by the plant pathogenic fungus Fusicladium effusum, is the most destructive disease of pecan, an important specialty crop cultivated in several regions of the world. Only a few members of the family Venturiaceae (in which the pathogen resides) have been reported sequenced. We report the first draft genome sequence (40.6 Mb) of an isolate F. effusum collected from a pecan tree (cv. Desirable) in central Georgia, in the US. The genome sequence described will be a useful resource for research of the biology and ecology of the pathogen, coevolution with the pecan host, characterization of genes of interest, and development of markers for studies of genetic diversity, genotyping and phylogenetic analysis. The annotation of the genome is described and a phylogenetic analysis is presented.

引用

页数：7

共 50 条

[21] GROWTH OF PECAN SCAB FUNGUS, FUSICLADIUM EFFUSAM, ON COMMON AND EXOTIC AGAR MEDIA
BARNES, GL
PHYTOPATHOLOGY, 1963, 53 (06) : 621 - &
[22] Characterization of a partial cytochrome b fragment to determine the risk of QoI resistance in Fusicladium effusum from pecan
Standish, J.
Brenneman, T.
Stevenson, K.
PHYTOPATHOLOGY, 2016, 106 (02) : 14 - 14
[23] DIURNAL AND SEASONAL DISCHARGE PATTERNS OF CONIDIA OF THE PECAN SCAB FUNGUS FUSICLADIUM-EFFUSEUM
GOTTWALD, TR
BERTRAND, PF
PHYTOPATHOLOGY, 1981, 71 (08) : 877 - 877
[24] Draft genome sequence of Neofusicoccum caryigenum associated with pecan leaf dieback
Arthur, Erin
Jo, Young-Ki
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2024, 13 (04):
[25] Annotated Draft Genome Sequence of the Apple Scab Pathogen Venturia inaequalis
Passey, Thomas A. J.
Armitage, Andrew D.
Xu, Xiangming
MICROBIOLOGY RESOURCE ANNOUNCEMENTS, 2018, 7 (12):
[26] Draft genome sequence of Venturia carpophila, the causal agent of peach scab
Chunxian Chen
Clive H. Bock
Bruce W. Wood
Standards in Genomic Sciences, 12
[27] Draft genome sequence of Venturia carpophila, the causal agent of peach scab
Chen, Chunxian
Bock, Clive H.
Wood, Bruce W.
STANDARDS IN GENOMIC SCIENCES, 2017, 12
[28] Morphology and taxonomy of the pecan-scab fungus, Cladosporium effusum (Wint.) comb. nov.
Demaree, JB
JOURNAL OF AGRICULTURAL RESEARCH, 1928, 37 : 0181 - 0187
[29] Draft genome sequence of Phyllosticta ampelicida, the cause of grapevine black rot
Eichmeier, Ales
Diaz-losada, Emilia
Hakalova, Eliska
Pecenka, Jakob
Stuskova, Katerina
Ojeda, Sonia
Gramaje, David
PHYTOPATHOLOGIA MEDITERRANEA, 2022, 61 (02) : 279 - 282
[30] Towards a Reference Pecan Genome Sequence
Jenkins, J.
Wilson, B.
Grimwood, J.
Schmutz, J.
Grauke, L. J.
I INTERNATIONAL SYMPOSIUM ON PECANS AND OTHER CARYA IN INDIGENOUS AND MANAGED SYSTEMS, 2015, 1070 : 101 - 108

← 1 2 3 4 5 →