DataSHIELD: resolving a conflict in contemporary bioscience-performing a pooled analysis of individual-level data without sharing the data

被引:117
|
作者
Wolfson, Michael [2 ]
Wallace, Susan E. [3 ,4 ]
Masca, Nicholas [1 ,5 ]
Rowe, Geoff [2 ]
Sheehan, Nuala A. [1 ,5 ]
Ferretti, Vincent [4 ,6 ]
LaFlamme, Philippe [4 ,7 ]
Tobin, Martin D. [1 ,5 ]
Macleod, John [8 ]
Little, Julian [4 ,9 ]
Fortier, Isabel [4 ,9 ,10 ]
Knoppers, Bartha M. [3 ,4 ]
Burton, Paul R. [1 ,4 ,5 ,9 ,11 ]
机构
[1] Univ Leicester, Dept Hlth Sci, Leicester LE1 7RH, Leics, England
[2] STAT Canada, Ottawa, ON, Canada
[3] McGill Univ, Fac Med, Dept Human Genet, Ctr Genom & Policy, Montreal, PQ, Canada
[4] Publ Populat Project Genom P3G, Montreal, PQ, Canada
[5] Univ Leicester, Dept Genet, Leicester LE1 7RH, Leics, England
[6] MaRS Ctr, Ontario Inst Canc Res, Toronto, ON, Canada
[7] Genome Quebec Innovat Ctr, Montreal, PQ, Canada
[8] Univ Bristol, Dept Social Med, Bristol, Avon, England
[9] Univ Ottawa, Dept Epidemiol & Community Med, Ottawa, ON, Canada
[10] Univ Montreal, Dept Med Sociale & Prevent, Montreal, PQ, Canada
[11] McGill Univ, Dept Epidemiol Biostat & Occupat Hlth, Montreal, PQ, Canada
基金
英国医学研究理事会; 英国惠康基金;
关键词
Pooling; analysis; meta-analysis; individual-level; study-level; generalized linear model; GLM; ethico-legal; ELSI; identification; disclosure; distributed computing; bioinformatics; information technology; IT; GENOME-WIDE ASSOCIATION; INCOME INEQUALITY; COMMON VARIANTS; LOCI; SUSCEPTIBILITY; EPIDEMIOLOGY; GENE; PRIVACY;
D O I
10.1093/ije/dyq111
中图分类号
R1 [预防医学、卫生学];
学科分类号
1004 ; 120402 ;
摘要
Methods Data aggregation through anonymous summary-statistics from harmonized individual-level databases (DataSHIELD), provides a simple approach to analysing pooled data that circumvents this conflict. This is achieved via parallelized analysis and modern distributed computing and, in one key setting, takes advantage of the properties of the updating algorithm for generalized linear models (GLMs). Results The conceptual use of DataSHIELD is illustrated in two different settings. Conclusions As the study of the aetiological architecture of chronic diseases advances to encompass more complex causal pathways-e.g. to include the joint effects of genes, lifestyle and environment-sample size requirements will increase further and the analysis of pooled individual-level data will become ever more important. An aim of this conceptual article is to encourage others to address the challenges and opportunities that DataSHIELD presents, and to explore potential extensions, for example to its use when different data sources hold different data on the same individuals.
引用
收藏
页码:1372 / 1382
页数:11
相关论文
共 50 条
  • [41] Preventing injuries in older people by preventing falls: A meta-analysis of individual-level data
    Robertson, MC
    Campbell, AJ
    Gardner, MM
    Devlin, N
    JOURNAL OF THE AMERICAN GERIATRICS SOCIETY, 2002, 50 (05) : 905 - 911
  • [42] Analysis of individual-level data from 2018–2020 Ebola outbreak in Democratic Republic of the Congo
    Harley Vossler
    Pierre Akilimali
    Yuhan Pan
    Wasiur R. KhudaBukhsh
    Eben Kenah
    Grzegorz A. Rempała
    Scientific Reports, 12
  • [43] Correlations between comorbidities in trials and the community: An individual-level participant data meta-analysis
    Crowther, Jamie
    Butterly, Elaine W.
    Hannigan, Laurie J.
    Guthrie, Bruce
    Wild, Sarah H.
    Mair, Frances S.
    Hanlon, Peter
    Chadwick, Fergus J.
    McAllister, David A.
    JOURNAL OF MULTIMORBIDITY AND COMORBIDITY, 2023, 13
  • [44] Appropriateness of the current parasitological control target for hookworm morbidity: A statistical analysis of individual-level data
    Malizia, Veronica
    Giardina, Federica
    de Vlas, Sake J.
    Coffeng, Luc E.
    PLOS NEGLECTED TROPICAL DISEASES, 2022, 16 (06):
  • [45] On the relative efficiency of using summary statistics versus individual-level data in meta-analysis
    Lin, D. Y.
    Zeng, D.
    BIOMETRIKA, 2010, 97 (02) : 321 - 332
  • [46] Overweight, obesity, and risk of cardiometabolic multimorbidity: pooled analysis of individual-level data for 120 813 adults from 16 cohort studies from the USA and Europe
    Kivimaki, Mika
    Kuosma, Eeva
    Ferrie, Jane E.
    Luukkonen, Ritva
    Nyberg, Solja T.
    Alfredsson, Lars
    Batty, G. David
    Brunner, Eric J.
    Fransson, Eleonor
    Goldberg, Marcel
    Knutsson, Anders
    Koskenvuo, Markku
    Nordin, Maria
    Oksanen, Tuula
    Pentti, Jaana
    Rugulies, Reiner
    Shipley, Martin J.
    Singh-Manoux, Archana
    Steptoe, Andrew
    Suominen, Sakari B.
    Theorell, Tores
    Vahtera, Jussi
    Virtanen, Marianna
    Westerholm, Peter
    Westerlund, Hugo
    Zins, Marie
    Hamer, Mark
    Bell, Joshua A.
    Tabak, Adam G.
    Jokela, Markus
    LANCET PUBLIC HEALTH, 2017, 2 (06): : E277 - E285
  • [47] Geographic variation in work injuries: a multilevel analysis of individual-level data and area-level factors within Canada
    Morassaei, Sara
    Breslin, F. Curtis
    Ibrahim, Selahadin A.
    Smith, Peter M.
    Mustard, Cameron A.
    Amick, Benjamin C., III
    Shankardass, Ketan
    Petch, Jeremy
    ANNALS OF EPIDEMIOLOGY, 2013, 23 (05) : 260 - 266
  • [48] Natural History of Recessive Stargardt Disease in Untreated Eyes: An Analysis of Study- and Individual-level Data
    Shen, Liangbo Linus
    Sun, Mengyuan
    Nardini, Holly Grossetta
    Del Priore, Lucian V.
    INVESTIGATIVE OPHTHALMOLOGY & VISUAL SCIENCE, 2019, 60 (09)
  • [49] Views of Ethical Best Practices in Sharing Individual-Level Data From Medical and Public Health Research: A Systematic Scoping Review
    Bull, Susan
    Roberts, Nia
    Parker, Michael
    JOURNAL OF EMPIRICAL RESEARCH ON HUMAN RESEARCH ETHICS, 2015, 10 (03) : 225 - 238
  • [50] Best Practices for Ethical Sharing of Individual-Level Health Research Data From Low- and Middle-Income Settings
    Bull, Susan
    Cheah, Phaik Yeong
    Denny, Spencer
    Jao, Irene
    Marsh, Vicki
    Merson, Laura
    More, Neena Shah
    Le Nguyen Thanh Nhan
    Osrin, David
    Tangseefa, Decha
    Wassenaar, Douglas
    Parker, Michael
    JOURNAL OF EMPIRICAL RESEARCH ON HUMAN RESEARCH ETHICS, 2015, 10 (03) : 302 - 313