DNA methylation molecular subtypes for prognosis prediction in lung adenocarcinoma

被引:5
|
作者
Xu, Duoduo [1 ]
Li, Cheng [2 ]
Zhang, Youjing [3 ]
Zhang, Jizhou [1 ]
机构
[1] Zhejiang Chinese Med Univ, Wenzhou Hosp OfTradit Chinese Med, 9 Jiaowei Rd, Wenzhou, Zhejiang, Peoples R China
[2] Huazhong Univ Sci & Technol, Cent Hosp Wuhan, Dept Otolaryngol Head & Neck Surg, Tongji Med Coll, Wuhan, Hubei, Peoples R China
[3] Huazhong Univ Sci & Technol, Tongji Med Coll, Sch Publ Hlth, Wuhan, Peoples R China
关键词
LUAD; DNA methylation; TCGA; Prognosis; CANCER; ASSOCIATION; CHINA;
D O I
10.1186/s12890-022-01924-0
中图分类号
R56 [呼吸系及胸部疾病];
学科分类号
摘要
Aims Lung cancer is one of the main results in tumor-related mortality. Methylation differences reflect critical biological features of the etiology of LUAD and affect prognosis. Methods In the present study, we constructed a prediction prognostic model integrating various DNA methylation used high-throughput omics data for improved prognostic evaluation. Results Overall 21,120 methylation sites were identified in the training dataset. Overall, 237 promoter genes were identified by genomic annotation of 205 CpG loci. We used Akakike Information Criteria (AIC) to obtain the validity of data fitting, but to prevent overfitting. After AIC clustering, specific methylation sites of cg19224164 and cg22085335 were left. Prognostic analysis showed a significant difference among the two groups (P = 0.017). In particular, the hypermethylated group had a poor prognosis, suggesting that these methylation sites may be a marker of prognosis. Conclusion The model might help in the identification of unknown biomarkers in predicting patient prognosis in LUAD.
引用
收藏
页数:10
相关论文
共 50 条
  • [31] DNA methylation epigenotypes in breast cancer molecular subtypes
    Naiara G Bediaga
    Amelia Acha-Sagredo
    Isabel Guerra
    Amparo Viguri
    Carmen Albaina
    Irune Ruiz Diaz
    Ricardo Rezola
    María Jesus Alberdi
    Joaquín Dopazo
    David Montaner
    Mertxe de Renobales
    Agustín F Fernández
    John K Field
    Mario F Fraga
    Triantafillos Liloglou
    Marian M de Pancorbo
    Breast Cancer Research, 12
  • [32] Molecular subtypes of breast cancer and DNA methylation patterns
    Jeong, Young Ju
    INTERNATIONAL JOURNAL OF MOLECULAR MEDICINE, 2013, 32 : S25 - S25
  • [33] Systematic Identification of Methylation Sites Associated with Lung Adenocarcinoma Prognosis
    Shi, X.
    Dong, X.
    Zhai, J.
    Liu, X.
    Lu, D.
    Ni, Z.
    Chen, A.
    Cai, K.
    JOURNAL OF THORACIC ONCOLOGY, 2021, 16 (03) : S535 - S535
  • [34] Molecular Subtypes and Prognostic Models for Predicting Prognosis of Lung Adenocarcinoma based on MiRNA-related Genes
    Wei, Yuxi
    Zhong, Wei
    Bi, Yalan
    Liu, Xiaoyan
    Zhou, Qing
    Liu, Jia
    Wang, Mengzhao
    Zhang, Hong
    Chen, Minjiang
    CURRENT MEDICINAL CHEMISTRY, 2024, 31 (34) : 5620 - 5637
  • [35] Gene Expression Classification of Lung Adenocarcinoma into Molecular Subtypes
    Hu, Fuyan
    Zhou, Yuxuan
    Wang, Qing
    Yang, Zhiyuan
    Shi, Yu
    Chi, Qingjia
    IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS, 2020, 17 (04) : 1187 - 1197
  • [36] Identification of DNA methylation signature to predict prognosis in gastric adenocarcinoma
    Hu, Sifeng
    Yin, Xiankun
    Zhang, Guangyong
    Meng, Fanmei
    JOURNAL OF CELLULAR BIOCHEMISTRY, 2019, 120 (07) : 11708 - 11715
  • [37] High PITX1 expression in lung adenocarcinoma patients is associated with DNA methylation and poor prognosis
    Song, Xinyue
    Zhao, Chaoran
    Jiang, Longyang
    Lin, Shu
    Bi, Jia
    Wei, Qian
    Yu, Lifeng
    Zhao, Lin
    Wei, Minjie
    PATHOLOGY RESEARCH AND PRACTICE, 2018, 214 (12) : 2046 - 2053
  • [38] Identification of DNA Methylation Signatures for Diagnosis of Lung Adenocarcinoma
    Piao, Yongjun
    Park, Kwang Ho
    Ryu, Keun Ho
    Xiang, Rong
    2019 IEEE 10TH INTERNATIONAL CONFERENCE ON AWARENESS SCIENCE AND TECHNOLOGY (ICAST 2019), 2019, : 557 - 561
  • [39] Identification of Prognostic DNA Methylation Signatures in Lung Adenocarcinoma
    Wang, Pengli
    Xu, Gaoran
    Gao, Erji
    Xu, Yong
    Liang, Leilei
    Jiang, Gening
    Duan, Liang
    OXIDATIVE MEDICINE AND CELLULAR LONGEVITY, 2022, 2022
  • [40] High DNA methylation in lung adenocarcinoma with a micropapillary pattern
    Ito, Yuki
    Matsusaka, Keisuke
    Usui, Genki
    Seki, Motoaki
    Fukuyo, Masaki
    CANCER SCIENCE, 2022, 113 : 840 - 840