MGH: a genome hub for the medicinal plant maca (Lepidium meyenii)

被引:3
|
作者
Chen, Junhao [1 ,2 ]
Zhang, Jiawei [2 ]
Lin, Meigui [2 ]
Dong, Wei [2 ]
Guo, Xinyue [2 ]
Dong, Yang [3 ,4 ,5 ]
Wang, Zhengjia [1 ]
Zhang, Liangsheng [2 ]
Chen, Fei [2 ]
机构
[1] Zhejiang A&F Univ, Sch Forestry & Biotechnol, State Key Lab Subtrop Silviculture, Hangzhou 311300, Zhejiang, Peoples R China
[2] Fujian Agr & Forestry Univ, State Key Lab Ecol Pest Control Fujian & Taiwan C, Key Lab Genet Breeding & Multiple Utilizat Corps, Minist Educ,Fujian Prov Key Lab Haixia Appl Plant, Fuzhou 350002, Fujian, Peoples R China
[3] Yunnan Agr Univ, Biol Big Data Coll, Kunming 650201, Yunnan, Peoples R China
[4] BGI Shenzhen, Shenzhen 4BGI, Guangdong, Peoples R China
[5] Natl & Local Joint Engn Res Ctr Germplasm Utiliza, Kunming 650201, Yunnan, Peoples R China
基金
中国国家自然科学基金;
关键词
RESOURCE; FAMILY;
D O I
10.1093/database/bay113
中图分类号
Q [生物科学];
学科分类号
07 ; 0710 ; 09 ;
摘要
Maca (Lepidium meyenii), a Brassicaceae herb plant originated from Andean mountains, has attracted wide interests due to its unique health benefits in reproduction and fertility. Because of its adaptation to the 4000 m high-altitude harsh environment, maca is attracting more and more attention from both crop breeders and basic biologists. After our previous release of the maca genome sequence, there's a growing need to store, query, analyze and integrate various maca resources efficiently. Here, we created Maca Genome Hub (MGH), a genomics and genetics database of maca. Currently, the MGH V1.0 harbors the genome sequence, predicted coding sequences and protein sequences, various annotations, markers and expression data. For the maca research community, we also provided the publications, researchers and related news. MGH is designed to enable users' easy access to analyze, retrieve and visualize the genomic or genetic information through a series of online tools, including the Basic Local Alignment Search Tool, the JBrowse, the query system, the synteny tool and the data downloads. These integrated heterogeneous data, tools and interfaces in MGH allow efficient mining of the latest genomics and genetics data. We hope that MGH will accelerate the research and development in maca.
引用
收藏
页数:8
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