Critical assessment of methods of protein structure prediction (CASP) - Round 6

被引:125
|
作者
Moult, J
Fidelis, K
Rost, B
Hubbard, T
Tramontano, A
机构
[1] Univ Maryland, Inst Biotechnol, Ctr Adv Res Biotechnol, Rockville, MD 20850 USA
[2] Lawrence Livermore Natl Lab, Biol & Biotechnol Res Program, Livermore, CA USA
[3] Univ Roma La Sapienza, Inst Pasteur, Fdn Cenci Bolognetti, Rome, Italy
[4] Columbia Univ, CUBIC, Dept Biochem & Mol Biophys, New York, NY USA
关键词
protein structure prediction; community-wide experiment; CASP;
D O I
10.1002/prot.20716
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
This article is an introduction to the special issue of the journal Proteins, dedicated to the sixth CASP experiment to assess the state of the art in protein structure prediction. The article describes the conduct of the experiment and the categories of prediction included, and outlines the evaluation and assessment procedures. A brief summary of progress over the decade of CASP experiments is also provided.
引用
收藏
页码:3 / 7
页数:5
相关论文
共 50 条
  • [21] The prediction of protein function at CASP6
    Soro, S
    Tramontano, A
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, 61 : 201 - 213
  • [22] Assessment of protein assembly prediction in CASP12
    Lafita, Aleix
    Bliven, Spencer
    Kryshtafovych, Andriy
    Bertoni, Martino
    Monastyrskyy, Bohdan
    Duarte, Jose M.
    Schwede, Torsten
    Capitani, Guido
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2018, 86 : 247 - 256
  • [23] Assessment of protein assembly prediction in CASP13
    Guzenko, Dmytro
    Lafita, Aleix
    Monastyrskyy, Bohdan
    Kryshtafovych, Andriy
    Duarte, Jose M.
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2019, 87 (12) : 1190 - 1199
  • [24] Reliability of assessment of protein structure prediction methods
    Marti-Renom, MA
    Madhusudhan, MS
    Fiser, A
    Rost, B
    Sali, A
    STRUCTURE, 2002, 10 (03) : 435 - 440
  • [25] Revisiting the prediction of protein function at CASP6
    Pellegrini-Calace, Marialuisa
    Soro, Simonetta
    Tramontano, Anna
    FEBS JOURNAL, 2006, 273 (13) : 2977 - 2983
  • [26] CASP6 data processing and automatic evaluation at the protein structure prediction center
    Kryshtafovych, A
    Milostan, M
    Szajkowski, L
    Daniluk, P
    Fidelis, K
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2005, 61 : 19 - 23
  • [27] Challenging the state of the art in protein structure prediction: Highlights of experimental target structures for the 10th Critical Assessment of Techniques for Protein Structure Prediction Experiment CASP10
    Kryshtafovych, Andriy
    Moult, John
    Bales, Patrick
    Bazan, J. Fernando
    Biasini, Marco
    Burgin, Alex
    Chen, Chen
    Cochran, Frank V.
    Craig, Timothy K.
    Das, Rhiju
    Fass, Deborah
    Garcia-Doval, Carmela
    Herzberg, Osnat
    Lorimer, Donald
    Luecke, Hartmut
    Ma, Xiaolei
    Nelson, Daniel C.
    van Raaij, Mark J.
    Rohwer, Forest
    Segall, Anca
    Seguritan, Victor
    Zeth, Kornelius
    Schwede, Torsten
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2014, 82 : 26 - 42
  • [28] Protein structure prediction center in CASP8
    Kryshtafovych, Andriy
    Krysko, Oleh
    Daniluk, Pawel
    Dmytriv, Zinovii
    Fidelis, Krzysztof
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2009, 77 : 5 - 9
  • [29] Critical assessment of protein intrinsic disorder prediction (CAID) - Results of round 2
    Del Conte, Alessio
    Mehdiabadi, Mahta
    Bouhraoua, Adel
    Mozon, Alexander M.
    Tosatto, Silvio C. E.
    Piovesan, Damiano
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2023, 91 (12) : 1925 - 1934
  • [30] Topology evaluation of models for difficult targets in the 14th round of the critical assessment of protein structure prediction
    Kinch, Lisa N.
    Pei, Jimin
    Kryshtafovych, Andriy
    Schaeffer, R. Dustin
    Grishin, Nick, V
    PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS, 2021, 89 (12) : 1673 - 1686