Biophysical studies of phase separation integrating experimental and computational methods

被引:29
|
作者
Fawzi, Nicolas L. [1 ]
Parekh, Sapun H. [2 ]
Mittal, Jeetain [3 ]
机构
[1] Brown Univ, Dept Mol Pharmacol Physiol & Biotechnol, Providence, RI 02912 USA
[2] Univ Texas Austin, Dept Biomed Engn, Austin, TX 78712 USA
[3] Lehigh Univ, Dept Chem & Biomol Engn, 111 Res Dr, Bethlehem, PA 18015 USA
关键词
Protein nuclear magnetic resonance spectroscopy (NMR); Phase; separation; Biomolecular condensates; Membraneless organelles; Molecular dynamics simulations; Advanced sampling techniques; Hyperspectral imaging; Raman spectroscopy; Forster resonance; energy transfer (FRET); Fluorescence lifetime imaging; Magic angle; MOLECULAR-INTERACTIONS; DISORDERED PROTEINS; RNA; TRANSITION; DYNAMICS; SIMULATION; GRANULES; BEHAVIOR; DOMAINS; PI;
D O I
10.1016/j.sbi.2021.04.004
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
Biomolecular phase separation that contributes to the formation of membraneless organelles and biomolecular condensates has recently gained tremendous attention because of the importance of these assemblies in physiology, disease, and engineering applications. Understanding and directing biomolecular phase separation requires a multi scale view of the biophysical properties of these phases. Yet, many classic tools to characterize biomolecular properties do not apply in these condensed phases. Here, we discuss insights obtained from spectroscopic methods, in particular nuclear magnetic resonance and optical spectroscopy, in understanding the molecular and atomic interactions that underlie the formation of protein-rich condensates. We also review approaches closely coupling nuclear magnetic resonance data with computational methods especially coarse-grained and all-atom molecular simulations, which provide insight into molecular features of phase separation. Finally, we point to future methodolical developments, particularly visualizing biophysical properties of condensates in cells.
引用
收藏
页码:78 / 86
页数:9
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