Daily Reports on Phage-Host Interactions

被引:8
|
作者
Albrycht, Kamil [1 ]
Rynkiewicz, Adam A. [1 ]
Harasymczuk, Michal [2 ]
Barylski, Jakub [3 ]
Zielezinski, Andrzej [1 ]
机构
[1] Adam Mickiewicz Univ, Fac Biol, Dept Computat Biol, Poznan, Poland
[2] Univ Med Sci, Dept Traumatol Orthopaed & Hand Surg, Poznan, Poland
[3] Adam Mickiewicz Univ, Fac Biol, Dept Mol Virol, Poznan, Poland
关键词
phage; host; bacteria; archaea; phage-host interactions; database; web application; BACTERIOPHAGES; BACTERIAL; RESOURCE; VIRUSES;
D O I
10.3389/fmicb.2022.946070
中图分类号
Q93 [微生物学];
学科分类号
071005 ; 100705 ;
摘要
Understanding phage-host relationships is crucial for the study of virus biology and the application of phages in biotechnology and medicine. However, information concerning the range of hosts for bacterial and archaeal viruses is scattered across numerous databases and is difficult to obtain. Therefore, here we present PHD (Phage & Host Daily), a web application that offers a comprehensive, up-to-date catalog of known phage-host associations that allows users to select viruses targeting specific bacterial and archaeal taxa of interest. Our service combines the latest information on virus-host interactions from seven source databases with current taxonomic classification retrieved directly from the groups and institutions responsible for its maintenance. The web application also provides summary statistics on host and virus diversity, their pairwise interactions, and the host range of deposited phages. PHD is updated daily and available at or .
引用
收藏
页数:6
相关论文
共 50 条
  • [31] Hi-C metagenome sequencing reveals soil phage-host interactions
    Wu, Ruonan
    Davison, Michelle R.
    Nelson, William C.
    Smith, Montana L.
    Lipton, Mary S.
    Jansson, Janet K.
    McClure, Ryan S.
    McDermott, Jason E.
    Hofmockel, Kirsten S.
    NATURE COMMUNICATIONS, 2023, 14 (01)
  • [32] Microbial diversity, genomics, and phage-host interactions of cyanobacterial harmful algal blooms
    Krausfeldt, Lauren E.
    Shmakova, Elizaveta
    Lee, Hyo Won
    Mazzei, Viviana
    Loftin, Keith A.
    Smith, Robert P.
    Karwacki, Emily
    Fortman, P. Eric
    Rosen, Barry H.
    Urakawa, Hidetoshi
    Dadlani, Manoj
    Colwell, Rita R.
    Lopez, Jose V.
    MSYSTEMS, 2024, 9 (07)
  • [33] Ecology and evolution in microbial systems: the generation and maintenance of diversity in phage-host interactions
    Jessup, Christine A.
    Forde, Samantha E.
    RESEARCH IN MICROBIOLOGY, 2008, 159 (05) : 382 - 389
  • [34] The Sequence of Two Bacteriophages with Hypermodified Bases Reveals Novel Phage-Host Interactions
    Kropinski, Andrew M.
    Turner, Dann
    Nash, John H. E.
    Ackermann, Hans-Wolfgang
    Lingohr, Erika J.
    Warren, Richard A.
    Ehrlich, Kenneth C.
    Ehrlich, Melanie
    VIRUSES-BASEL, 2018, 10 (05):
  • [35] The impact of simultaneous infections on phage-host ecology
    Sudweeks, Jaye
    Hauert, Christoph
    THEORETICAL POPULATION BIOLOGY, 2025, 161 : 42 - 49
  • [36] Phage-host interactions as a driver of population dynamics during wine fermentation: Betting on underdogs
    Chaib, Amel
    Philippe, Cecile
    Jaomanjaka, Fety
    Barchi, Yasma
    Oviedo-Hernandez, Florencia
    Claisse, Olivier
    Le Marrec, Claire
    INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY, 2022, 383
  • [37] Impact of initial phage/host ratio and nutrient addition on coexistence in a phage-host system
    Wolf, A
    Zheng, TL
    Witzel, KP
    Jost, G
    AQUATIC MICROBIAL ECOLOGY, 2004, 35 (02) : 131 - 139
  • [38] PHAGE-HOST INTERACTIONS AND THE PRODUCTION OF TYPE-A STREPTOCOCCAL EXOTOXIN IN GROUP-A STREPTOCOCCI
    MCKANE, L
    FERRETTI, JJ
    INFECTION AND IMMUNITY, 1981, 34 (03) : 915 - 919
  • [39] Establishing a differentiated airway epithelial cell model to assess phage-host airway interactions
    Ng, Renee
    Stick, Stephen
    Kicic, Anthony
    Ling, Kak-Ming
    RESPIROLOGY, 2024, 29 : 18 - 19
  • [40] Development of Styrene Maleic Acid Lipid Particles as a Tool for Studies of Phage-Host Interactions
    de Jonge, Patrick A.
    Sibinga, Dieuwke J. C. Smit
    Boright, Oliver A.
    Costa, Ana Rita
    Nobrega, Franklin L.
    Brouns, Stan J. J.
    Dutilh, Bas E.
    JOURNAL OF VIROLOGY, 2020, 94 (23)