Translesion activity of PrimPol on DNA with cisplatin and DNA-protein cross-links

被引:19
|
作者
Boldinova, Elizaveta O. [1 ]
Yudkina, Anna, V [3 ]
Shilkin, Evgeniy S. [1 ]
Gagarinskaya, Diana, I [1 ]
Baranovskiy, Andrey G. [2 ]
Tahirov, Tahir H. [2 ]
Zharkov, Dmitry O. [3 ,4 ]
Makarova, Alena, V [1 ]
机构
[1] Natl Res Ctr, Kurchatov Inst, Inst Mol Genet, Kurchatov Sq 2, Moscow 123182, Russia
[2] Univ Nebraska Med Ctr, Eppley Inst Res Canc & Allied Dis, Fred & Pamela Buffett Canc Ctr, Omaha, NE 68198 USA
[3] Russian Acad Sci, Inst Chem Biol & Fundamental Med, Siberian Branch, 8 Lavrentiev Ave, Novosibirsk 630090, Russia
[4] Novosibirsk State Univ, 2 Pirogova St, Novosibirsk 630090, Russia
基金
俄罗斯科学基金会; 俄罗斯基础研究基金会;
关键词
BASE-EXCISION-REPAIR; POLYMERASE-ZETA; ERROR-FREE; ACCESSORY SUBUNITS; MITOCHONDRIAL-DNA; IN-VITRO; REPLICATION; BYPASS; BETA; EFFICIENT;
D O I
10.1038/s41598-021-96692-y
中图分类号
O [数理科学和化学]; P [天文学、地球科学]; Q [生物科学]; N [自然科学总论];
学科分类号
07 ; 0710 ; 09 ;
摘要
Human PrimPol belongs to the archaeo-eukaryotic primase superfamily of primases and is involved in de novo DNA synthesis downstream of blocking DNA lesions and non-B DNA structures. PrimPol possesses both DNA/RNA primase and DNA polymerase activities, and also bypasses a number of DNA lesions in vitro. In this work, we have analyzed translesion synthesis activity of PrimPol in vitro on DNA with an 1,2-intrastrand cisplatin cross-link (1,2-GG CisPt CL) or a model DNA-protein cross-link (DpCL). PrimPol was capable of the 1,2-GG CisPt CL bypass in the presence of Mn2+ ions and preferentially incorporated two complementary dCMPs opposite the lesion. Nucleotide incorporation was stimulated by PolDIP2, and yeast Pol zeta efficiently extended from the nucleotides inserted opposite the 1,2-GG CisPt CL in vitro. DpCLs significantly blocked the DNA polymerase activity and strand displacement synthesis of PrimPol. However, PrimPol was able to reach the DpCL site in single strand template DNA in the presence of both Mg2+ and Mn2+ ions despite the presence of the bulky protein obstacle.
引用
收藏
页数:12
相关论文
共 50 条
  • [31] DNA-Protein Cross-Links: Formation, Structural Identities, and Biological Outcomes
    Tretyakova, Natalia Y.
    Groehler, Arnold
    Ji, Shaofei
    ACCOUNTS OF CHEMICAL RESEARCH, 2015, 48 (06) : 1631 - 1644
  • [32] Synthesis and in vitro replication studies of model DNA-protein cross-links
    Wickramaratne, Susith
    Yeo, Jung-Eun
    Mukherjee, Shivam
    Khatwani, Santoshkumar
    Wang, Yeng-Chih
    Schaerer, Orlando
    Distefano, Mark
    Tretyakova, Natalia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 246
  • [33] DNA-protein cross-links: Formidable challenges to maintaining genome integrity
    Ide, Hiroshi
    Nakano, Toshiaki
    Salem, Amir M. H.
    Shoulkamy, Mahmoud, I
    DNA REPAIR, 2018, 71 : 190 - 197
  • [34] Structural characterization of formaldehyde-induced DNA-protein cross-links
    Lu, Kun
    Ye, Wenjie
    Zhou, Li
    Collins, Leonard B.
    Chen, Xian
    Gold, Avram
    Ball, Louise M.
    Swenberg, James A.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2010, 240
  • [35] Versatile method to construct model DNA-protein cross-links (DPCs)
    Pujari, Suresh
    Zhang, Mandy
    Ji, Shaofei
    Distefano, Mark
    Tretyakova, Natalia
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2017, 254
  • [36] The CMG Helicase Bypasses DNA-Protein Cross-Links to Facilitate Their Repair
    Sparks, Justin L.
    Chistol, Gheorghe
    Gao, Alan O.
    Raeschle, Markus
    Larsen, Nicolai B.
    Mann, Matthias
    Duxin, Julien P.
    Walter, Johannes C.
    CELL, 2019, 176 (1-2) : 167 - +
  • [37] DNA-protein cross-links between abasic DNA damage and mitochondrial transcription factor A (TFAM)
    Xu, Wenyan
    Tang, Jin
    Zhao, Linlin
    NUCLEIC ACIDS RESEARCH, 2023, 51 (01) : 41 - 53
  • [38] Stable DNA-protein cross-links are products of DNA charge transport in a nucleosome core particle
    Bjorklund, Chad C.
    Davis, William B.
    BIOCHEMISTRY, 2007, 46 (38) : 10745 - 10755
  • [39] Replication dependent DNA repair of DNA interstrand cross-links by human translesion DNA polymerases
    Xu, Wenyan
    Ghosh, Souradyuti
    Ouellette, Adam
    Greenberg, Marc
    Zhao, Linlin
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2015, 250
  • [40] Recognition of cisplatin-DNA interstrand cross-links by replication protein A
    Patrick, Steve M.
    Tillison, Kristin
    Horn, Jeffrey M.
    BIOCHEMISTRY, 2008, 47 (38) : 10188 - 10196