Optimized base editors enable efficient editing in cells, organoids and mice

被引:263
|
作者
Zafra, Maria Paz [1 ]
Schatoff, Emma M. [1 ,2 ]
Katti, Alyna [1 ,3 ]
Foronda, Miguel [1 ]
Breinig, Marco [4 ,5 ]
Schweitzer, Anabel Y. [4 ,5 ]
Simon, Amber [1 ]
Han, Teng [1 ,3 ]
Goswami, Sukanya [1 ]
Montgomery, Emma [1 ]
Thibado, Jordana [3 ]
Kastenhuber, Edward R. [6 ,7 ]
Sanchez-Rivera, Francisco J. [6 ]
Shi, Junwei [8 ,9 ]
Vakoc, Christopher R. [8 ]
Lowe, Scott W. [6 ,10 ]
Tschaharganeh, Darjus F. [4 ,5 ]
Dow, Lukas E. [1 ,3 ,11 ]
机构
[1] Weill Cornell Med, Dept Med, Sandra & Edward Meyer Canc Ctr, New York, NY 10065 USA
[2] Weill Cornell Rockefeller Sloan Kettering Tri Ins, New York, NY USA
[3] Weill Cornell Med, Weill Cornell Grad Sch Med Sci, New York, NY 10065 USA
[4] Univ Hosp, German Canc Res Ctr, DKFZ, Helmholtz Univ Grp Cell Plast & Epigenet Remod, Heidelberg, Germany
[5] Univ Hosp, Inst Pathol, Heidelberg, Germany
[6] Mem Sloan Kettering Canc Ctr, Cancer Biol & Genet, 1275 York Ave, New York, NY 10021 USA
[7] Gerstner Sloan Kettering Grad Sch Biomed Sci, New York, NY USA
[8] Cold Spring Harbor Lab, New York, NY USA
[9] Univ Penn, Perelman Sch Med, Dept Canc Biol, Philadelphia, PA 19104 USA
[10] Mem Sloan Kettering Canc Ctr, Howard Hughes Med Inst, 1275 York Ave, New York, NY 10021 USA
[11] Weill Cornell Med, Dept Biochem, New York, NY 10065 USA
关键词
CRISPR-CAS9; NUCLEASES; GENOMIC DNA; GENERATION; LIVER;
D O I
10.1038/nbt.4194
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
CRISPR base editing enables the creation of targeted single-base conversions without generating double-stranded breaks. However, the efficiency of current base editors is very low in many cell types. We reengineered the sequences of BE3, BE4Gam, and xBE3 by codon optimization and incorporation of additional nuclear-localization sequences. Our collection of optimized constitutive and inducible base-editing vector systems dramatically improves the efficiency by which single-nucleotide variants can be created. The reengineered base editors enable target modification in a wide range of mouse and human cell lines, and intestinal organoids. We also show that the optimized base editors mediate efficient in vivo somatic editing in the liver in adult mice.
引用
收藏
页码:888 / +
页数:9
相关论文
共 50 条
  • [31] LIPID NANOPARTICLES ENABLE EFFICIENT BASE EDITING OF CD45-DIRECTED CART CELLS FOR UNIVERSAL BLOOD CANCER IMMUNOTHERAPY
    Ghahe, E. Kamali
    Wellhausen, N.
    Geczy, R.
    Balgi, A.
    Clarke, S.
    June, C.
    Gill, S.
    Herbst-Nowrouzi, F.
    CYTOTHERAPY, 2024, 26 (06) : S212 - S212
  • [32] Secondary follicles enable efficient germline mtDNA base editing at hard-to-edit site
    Xie, Qin
    Wu, Haibo
    Long, Hui
    Xiao, Caiwen
    Qiu, Jiaxin
    Yu, Weina
    Jiang, Xueyi
    Liu, Junbo
    Zhang, Shuo
    Lyu, Qifeng
    Suo, Lun
    Kuang, Yanping
    MOLECULAR THERAPY NUCLEIC ACIDS, 2024, 35 (02):
  • [33] Precise plant genome editing using base editors and prime editors
    Molla, Kutubuddin A.
    Sretenovic, Simon
    Bansal, Kailash C.
    Qi, Yiping
    NATURE PLANTS, 2021, 7 (09) : 1166 - 1187
  • [34] Precise plant genome editing using base editors and prime editors
    Kutubuddin A. Molla
    Simon Sretenovic
    Kailash C. Bansal
    Yiping Qi
    Nature Plants, 2021, 7 : 1166 - 1187
  • [35] Base editing rescue of spinal muscular atrophy in cells and in mice
    Arbab, Mandana
    Matuszek, Zaneta
    Kray, Kaitlyn M.
    Du, Ailing
    Newby, Gregory A.
    Blatnik, Anton J.
    Raguram, Aditya
    Richter, Michelle F.
    Zhao, Kevin T.
    Levy, Jonathan M.
    Shen, Max W.
    Arnold, W. David
    Wang, Dan
    Xie, Jun
    Gao, Guangping
    Burghes, Arthur H. M.
    Liu, David R.
    SCIENCE, 2023, 380 (6642)
  • [36] CRISPR-Cas12a base editors confer efficient multiplexed genome editing in rice
    Cheng, Yanhao
    Zhang, Yingxiao
    Li, Gen
    Fang, Hong
    Sretenovic, Simon
    Fan, Avery
    Li, Jiang
    Xu, Jianping
    Que, Qiudeng
    Qi, Yiping
    PLANT COMMUNICATIONS, 2023, 4 (04)
  • [37] Efficient Genome Editing in Setaria italica Using CRISPR/Cas9 and Base Editors
    Liang, Zhen
    Wu, Yuqing
    Ma, Lingling
    Guo, Yingjie
    Ran, Yidong
    FRONTIERS IN PLANT SCIENCE, 2022, 12
  • [38] Efficient Rescue of Retinal Degeneration in Pde6a Mice by Engineered Base Editing and Prime Editing
    Liu, Zhiquan
    Chen, Siyu
    Davis, Alexander E.
    Lo, Chien-Hui
    Wang, Qing
    Li, Tingting
    Ning, Ke
    Zhang, Qi
    Zhao, Jingyu
    Wang, Sui
    Sun, Yang
    ADVANCED SCIENCE, 2024, 11 (42)
  • [39] Safer and efficient base editing and prime editing via ribonucleoproteins delivered through optimized lipid-nanoparticle formulations
    Holubowicz, Rafal
    Du, Samuel W.
    Felgner, Jiin
    Smidak, Roman
    Choi, Elliot H.
    Palczewska, Grazyna
    Menezes, Carolline Rodrigues
    Dong, Zhiqian
    Gao, Fangyuan
    Medani, Omar
    Yan, Alexander L.
    Holubowicz, Maria W.
    Chen, Paul Z.
    Bassetto, Marco
    Risaliti, Eleonora
    Salom, David
    Workman, J. Noah
    Kiser, Philip D.
    Foik, Andrzej T.
    Lyon, David C.
    Newby, Gregory A.
    Liu, David R.
    Felgner, Philip L.
    Palczewski, Krzysztof
    NATURE BIOMEDICAL ENGINEERING, 2025, 9 (01): : 57 - 78
  • [40] COMPREHENSIVE ANALYSIS OF THE EDITING WINDOW OF TALE BASE EDITORS
    Feola, M.
    Pulican, S.
    Tkach, D.
    Hong, R.
    Boyne, A.
    Mayer, L.
    Duclert, A.
    Duchateau, P.
    Juillerat, A.
    CYTOTHERAPY, 2023, 25 (06) : S262 - S263