Structural characterization of a flavin-specific RNA aptamer by chemical probing

被引:16
|
作者
Burgstaller, P [1 ]
Famulok, M [1 ]
机构
[1] UNIV MUNICH, GENZENTRUM, INST BIOCHEM, D-81375 MUNICH, GERMANY
关键词
D O I
10.1016/0960-894X(96)00189-8
中图分类号
R914 [药物化学];
学科分类号
100701 ;
摘要
In a previous study, an RNA aptamer for the specific recognition of flavin cofactors was isolated from a combinatorial RNA-pool. We have now carried out a structural analysis of this RNA by chemical probing and identified residues protected from modification in the presence of the cofactor and modifications that interfere with its complexation. An induced fit of the RNA motif occurs upon cofactor binding. Our analysis led to a refined secondary structure model for the FMN/RNA complex. (C) 1996 Elsevier Science Ltd
引用
收藏
页码:1157 / 1162
页数:6
相关论文
共 50 条
  • [11] In vitro selection of RNA aptamer specific to Staphylococcus aureus
    Seung Ryul Han
    Seong-Wook Lee
    Annals of Microbiology, 2014, 64 : 883 - 885
  • [12] Highly specific aptamer trap for extremophilic RNA polymerases
    Petushkov, Ivan
    Feklistov, Andrey
    Kulbachinskiy, Andrey
    BIOCHIMIE, 2024, 225 : 99 - 105
  • [13] An RNA aptamer that recognizes a specific conformation of the protein calsenilin
    Lee, Kyung Hyun
    Jeong, Sunjoo
    Yang, Eun Gyung
    Park, Yong-Keun
    Yu, Jaehoon
    BIOORGANIC & MEDICINAL CHEMISTRY, 2007, 15 (24) : 7545 - 7552
  • [14] Identification of RNA Aptamer Specific to Mutant KRAS Protein
    Jeong, Sujin
    Han, Seung Ryul
    Lee, Young Ju
    Kim, Ju Hyun
    Lee, Seong-Wook
    OLIGONUCLEOTIDES, 2010, 20 (03) : 155 - 161
  • [15] In Vitro Selection of RNA Aptamer Specific to Salmonella Typhimurium
    Han, Seung Ryul
    Lee, Seong-Wook
    JOURNAL OF MICROBIOLOGY AND BIOTECHNOLOGY, 2013, 23 (06) : 878 - 884
  • [16] Rational Truncation of an RNA Aptamer to Prostate-Specific Membrane Antigen Using Computational Structural Modeling
    Rockey, William M.
    Hernandez, Frank J.
    Huang, Sheng-You
    Cao, Song
    Howell, Craig A.
    Thomas, Gregory S.
    Liu, Xiu Ying
    Lapteva, Natalia
    Spencer, David M.
    McNamara, James O., II
    Zou, Xiaoqin
    Chen, Shi-Jie
    Giangrande, Paloma H.
    NUCLEIC ACID THERAPEUTICS, 2011, 21 (05) : 299 - 314
  • [17] Structural basis of prostate-specific membrane antigen recognition by the A9g RNA aptamer
    Ptacek, Jakub
    Zhang, Dong
    Qiu, Liming
    Kruspe, Sven
    Motlova, Lucia
    Kolenko, Petr
    Novakova, Zora
    Shubham, Shambhavi
    Havlinova, Barbora
    Baranova, Petra
    Chen, Shi-Jie
    Zou, Xiaoqin
    Giangrande, Paloma
    Barinka, Cyril
    NUCLEIC ACIDS RESEARCH, 2020, 48 (19) : 11130 - 11145
  • [18] RNA:RNA interaction in ternary complexes resolved by chemical probing
    Banijamali, Elnaz
    Baronti, Lorenzo
    Becker, Walter
    Sajkowska-Kozielewicz, Joanna J.
    Huang, Ting
    Palka, Christina
    Kosek, David
    Sweetapple, Lara
    Mueller, Juliane
    Stone, Michael D.
    Andersson, Emma R.
    Petzold, Katja
    RNA, 2023, 29 (03) : 317 - 329
  • [19] Probing structural and chemical properties of cellulose
    Gnanakaran, Gnana
    Bellesia, Giovanni
    Ramakrishnan, Parthasarathi
    Chundawat, Shishir
    Langan, Paul
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2011, 242
  • [20] Probing the structural requisites for enzymatic flavin-N5-oxide formation
    Batcha, Raspudin Saleem
    Teufel, Robin
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2016, 72 : S255 - S255