Columba 2.0: A Co-Layout Synthesis Tool for Continuous-Flow Microfluidic Biochips

被引:31
|
作者
Tseng, Tsun-Ming [1 ]
Li, Mengchu [1 ]
Freitas, Daniel Nestor [2 ]
McAuley, Travis [2 ]
Li, Bing [1 ]
Ho, Tsung-Yi [3 ]
Araci, Ismail Emre [2 ]
Schlichtmann, Ulf [1 ]
机构
[1] TUM, Chair Elect Design Automat, D-80333 Munich, Germany
[2] Santa Clara Univ, Dept Bioengn, Santa Clara, CA 95053 USA
[3] Natl Tsing Hua Univ, Dept Comp Sci, Hsinchu 30013, Taiwan
关键词
Continuous-flow; microfluidic large-scale integration (mLSI); microfluidics; mixed integer linear programming; physical design; CELLS; PROCESSOR; BACTERIA;
D O I
10.1109/TCAD.2017.2760628
中图分类号
TP3 [计算技术、计算机技术];
学科分类号
0812 ;
摘要
Continuous-flow microfluidic large-scale integration (mLSI) shows increasing importance in biological/chemical fields, thanks to its advantages in miniaturization and high throughput. Current mLSI is designed manually, which is time-consuming and error-prone. In recent years, design automation research for mLSI has evolved rapidly, aiming to replace manual labor by computers. However, previous design automation approaches used to design each microfluidic layer separately and oversimplify the layer interactions to various degrees, which resulted in a gap between realistic requirements and automatically generated designs. In this paper, we propose a module model library to accurately model microfluidic components involving layer interactions; and we propose a co-layout synthesis tool, Columba, which generates AutoCAD-compatible designs that fulfill all designs rules and can be directly used for mask fabrication. Columba takes plain-text netlist descriptions as inputs, and performs simultaneous placement and routing for multiple layers while ensuring the planarity of each layer. We validate Columba by fabricating two of its output designs. Columba is the first design automation tool that can seamlessly synchronize with the manufacturing flow.
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页码:1588 / 1601
页数:14
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