In this paper, we apply intermediate extension functors associated to certain recollements of functor categories to study relative Auslander algebras. In particular, we study the existence of tilting-cotilting modules over such algebras. Some applications will be provided. In particular, it will be shown that two Gorenstein algebras of G-dimension one that are of finite Cohen-Macaulay-type are Morita equivalent if and only if their Cohen-Macaulay Auslander algebras are Morita equivalent.