Efficient sampling of solvent free energies in polymers

被引:34
|
作者
van der Vegt, NFA
Briels, WJ
机构
[1] Univ Twente, Membrane Technol Grp, NL-7500 AE Enschede, Netherlands
[2] Univ Twente, Chem Phys Lab, NL-7500 AE Enschede, Netherlands
来源
JOURNAL OF CHEMICAL PHYSICS | 1998年 / 109卷 / 17期
关键词
D O I
10.1063/1.477379
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Solvent excess chemical potentials in amorphous polymers were calculated by means of molecular dynamics simulations using two different methods, the thermodynamic integration method and an extended ensemble method, during which the coupling of a test particle with the rest of the system is continuously changing. The latter method was found to probe the simulation box very efficiently whereas, in the thermodynamic integration, only limited regions of the box were sampled. Excess free energies of chloroform in swollen polydimethylsiloxane were found to decrease with increasing solvent swelling in qualitative agreement with experiment. (C) 1998 American Institute of Physics. [S0021-9606(98)51041-0].
引用
收藏
页码:7578 / 7582
页数:5
相关论文
共 50 条
  • [21] A SOLVENT-FREE SAMPLING METHOD FOR AIRBORNE TOLUENE DIISOCYANATE
    ROBERT, A
    SIMON, P
    CHROMATOGRAPHIA, 1987, 23 (07) : 507 - 511
  • [22] Partitioning ion hydration free energies to incorporate quantum chemical sampling
    Pollard, Travis
    Beck, Thomas L.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2013, 246
  • [23] Toward Automated Sampling of Polymorph Nucleation and Free Energies with the SGOOP and Metadynamics
    Zou, Ziyue
    Tsai, Sun-Ting
    Tiwary, Pratyush
    JOURNAL OF PHYSICAL CHEMISTRY B, 2021, 125 (47): : 13049 - 13056
  • [24] Fragment-Based Computation of Binding Free Energies by Systematic Sampling
    Clark, Matthew
    Meshkat, Siavash
    Talbot, George T.
    Carnevali, Paolo
    Wisernan, Jeffrey S.
    JOURNAL OF CHEMICAL INFORMATION AND MODELING, 2009, 49 (08) : 1901 - 1913
  • [25] Coupling nonpolar and polar solvation free energies in implicit solvent models
    Dzubiella, J
    Swanson, JMJ
    McCammon, JA
    JOURNAL OF CHEMICAL PHYSICS, 2006, 124 (08):
  • [26] Computing free energies using nested sampling-based approaches
    Wilson, Blake A.
    Nasrabadi, Amir T.
    Gelb, Lev D.
    Nielsen, Steven O.
    MOLECULAR SIMULATION, 2018, 44 (13-14) : 1108 - 1123
  • [27] Predicting solvation free energies with an implicit solvent machine learning potential
    Röcken, Sebastien
    Burnet, Anton F.
    Zavadlav, Julija
    Journal of Chemical Physics, 2024, 161 (23):
  • [28] The Importance of Excluded Solvent Volume Effects in Computing Hydration Free Energies
    Yang, Pei-Kun
    Lim, Carmay
    JOURNAL OF PHYSICAL CHEMISTRY B, 2008, 112 (47): : 14863 - 14868
  • [29] Protein hydration free energies - insights from explicit solvent simulations
    Setny, P.
    EUROPEAN BIOPHYSICS JOURNAL WITH BIOPHYSICS LETTERS, 2015, 44 : S174 - S174
  • [30] Computing free energies of protein conformations from explicit solvent simulations
    Zhuravlev, Pavel I.
    Wu, Sangwook
    Potoyan, Davit A.
    Rubinstein, Michael
    Papoian, Garegin A.
    METHODS, 2010, 52 (01) : 115 - 121