Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection

被引:33
|
作者
Mann, Richard P. [1 ]
Perna, Andrea [1 ]
Strombom, Daniel [1 ]
Garnett, Roman [2 ]
Herbert-Read, James E. [3 ]
Sumpter, David J. T. [1 ]
Ward, Ashley J. W. [3 ]
机构
[1] Uppsala Univ, Dept Math, S-75238 Uppsala, Sweden
[2] Carnegie Mellon Univ, Inst Robot, Pittsburgh, PA 15213 USA
[3] Univ Sydney, Sch Biol Sci, Sydney, NSW 2006, Australia
关键词
PHASE-TRANSITION; COLLECTIVE BEHAVIOR; DECISION-MAKING; MOTION;
D O I
10.1371/journal.pcbi.1002961
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Inference of interaction rules of animals moving in groups usually relies on an analysis of large scale system behaviour. Models are tuned through repeated simulation until they match the observed behaviour. More recent work has used the fine scale motions of animals to validate and fit the rules of interaction of animals in groups. Here, we use a Bayesian methodology to compare a variety of models to the collective motion of glass prawns (Paratya australiensis). We show that these exhibit a stereotypical 'phase transition', whereby an increase in density leads to the onset of collective motion in one direction. We fit models to this data, which range from: a mean-field model where all prawns interact globally; to a spatial Markovian model where prawns are self-propelled particles influenced only by the current positions and directions of their neighbours; up to non-Markovian models where prawns have 'memory' of previous interactions, integrating their experiences over time when deciding to change behaviour. We show that the mean-field model fits the large scale behaviour of the system, but does not capture the observed locality of interactions. Traditional self-propelled particle models fail to capture the fine scale dynamics of the system. The most sophisticated model, the non-Markovian model, provides a good match to the data at both the fine scale and in terms of reproducing global dynamics, while maintaining a biologically plausible perceptual range. We conclude that prawns' movements are influenced by not just the current direction of nearby conspecifics, but also those encountered in the recent past. Given the simplicity of prawns as a study system our research suggests that self-propelled particle models of collective motion should, if they are to be realistic at multiple biological scales, include memory of previous interactions and other non-Markovian effects.
引用
收藏
页数:13
相关论文
共 50 条
  • [1] RETRACTED: Multi-scale Inference of Interaction Rules in Animal Groups Using Bayesian Model Selection (Retracted Article)
    Mann, Richard P.
    Perna, Andrea
    Strombom, Daniel
    Garnett, Roman
    Herbert-Read, James E.
    Sumpter, David J. T.
    Ward, Ashley J. W.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2012, 8 (01)
  • [2] Bayesian Inference for Identifying Interaction Rules in Moving Animal Groups
    Mann, Richard P.
    [J]. PLOS ONE, 2011, 6 (08):
  • [3] Bayesian inference in a sample selection model with multiple selection rules
    Rezaee, Alireza
    Ganjali, Mojtaba
    Samani, Ehsan Bahrami
    [J]. COMMUNICATIONS IN STATISTICS-THEORY AND METHODS, 2024, 53 (12) : 4290 - 4310
  • [4] Multi-Scale Symmetries and Selection Rules in High Harmonic Generation
    Lerner, Gavriel
    Hareli, Liran
    Shoulga, Georgiy
    Neufeld, Ofer
    Bordo, Eliyahu
    Bahabad, Alon
    Cohen, Oren
    [J]. 2019 CONFERENCE ON LASERS AND ELECTRO-OPTICS EUROPE & EUROPEAN QUANTUM ELECTRONICS CONFERENCE (CLEO/EUROPE-EQEC), 2019,
  • [5] Fatigue life prediction of laminated composites using a multi-scale M-LaF and Bayesian inference
    Mustafa, Ghulam
    Crawford, Curran
    Suleman, Afzal
    [J]. COMPOSITE STRUCTURES, 2016, 151 : 149 - 161
  • [6] Batch Bayesian optimization using multi-scale search
    Joy, Tinu Theckel
    Rana, Santu
    Gupta, Sunil
    Venkatesh, Svetha
    [J]. KNOWLEDGE-BASED SYSTEMS, 2020, 187
  • [7] AutoFocus: Efficient Multi-Scale Inference
    Najibi, Mahyar
    Singh, Bharat
    Davis, Larry S.
    [J]. 2019 IEEE/CVF INTERNATIONAL CONFERENCE ON COMPUTER VISION (ICCV 2019), 2019, : 9744 - 9754
  • [8] Texture segmentation using SOM and multi-scale Bayesian estimation
    Kim, Tae Hyung
    Eom, Il Kyu
    Kim, Yoo Shin
    [J]. ADVANCES IN NEURAL NETWORKS - ISNN 2006, PT 2, PROCEEDINGS, 2006, 3972 : 661 - 668
  • [9] Bayesian Multi-Scale Optimistic Optimization
    Wang, Ziyu
    Shakibi, Babak
    Jin, Lin
    de Freitas, Nando
    [J]. ARTIFICIAL INTELLIGENCE AND STATISTICS, VOL 33, 2014, 33 : 1005 - 1014
  • [10] Bayesian inference in a sample selection model
    van Hasselt, Martijn
    [J]. JOURNAL OF ECONOMETRICS, 2011, 165 (02) : 221 - 232