pRESTO: a toolkit for processing high-throughput sequencing raw reads of lymphocyte receptor repertoires

被引：0
|
作者：
Heiden, Jason Vander [1 ]
Yaari, Gur [2 ,5 ]
Uduman, Mohamed [1 ,2 ]
Stern, Joel [3 ,4 ,6 ]
O'Connor, Kevin [3 ,4 ]
Halfer, David [3 ,4 ]
Vigneault, Francois [7 ]
Kleinstein, Steven [1 ,2 ]
机构：
[1] Yale, Interdept Program Computat Biol & Bioinformat, New Haven, CT USA
[2] Yale, Dept Pathol, New Haven, CT USA
[3] Yale, Dept Neurol, New Haven, CT USA
[4] Yale, Human & Translat Immunol Program, New Haven, CT USA
[5] Bar Ilan Univ, Fac Engn, Bioengn Program, Ramat Gan, Israel
[6] Hofstra Northshore LIJ Sch Med, Dept Sci Educ, Hempstead, NY USA
[7] AbVitro Inc, Boston, MA USA
来源：
JOURNAL OF IMMUNOLOGY | 2014年 / 192卷
关键词：
D O I：
暂无
中图分类号：
R392 [医学免疫学]; Q939.91 [免疫学];
学科分类号：
100102 ;
摘要：
TECH1P.863
引用
收藏
页数：2
相关论文
共 50 条
  • [21] High-throughput Treg cell receptor sequencing reveals differential immune repertoires in rheumatoid arthritis with kidney deficiency
    Zhang, Lu
    Jiao, Wei
    Deng, Hui
    Hu, Congqi
    Xu, Jia
    Yu, Jiahui
    Liu, Lijuan
    Zhang, Mingying
    Liu, Jiduo
    Chen, Guangxing
    PEERJ, 2023, 11
  • [22] Assessing B lymphocyte clonal diversity and expansion by high-throughput sequencing of rearranged IgH loci from naive and memory repertoires
    Emerson, Ryan
    DeWitt, William
    Lindau, Paul
    Sherwood, Anna
    Williamson, David
    Rieder, Mark
    Chung, Moon-Wook
    Carlson, Christopher
    Robins, Harlan
    JOURNAL OF IMMUNOLOGY, 2014, 192
  • [23] A facile technology for the high-throughput sequencing of the paired VH:VL and TCRβ:TCRα repertoires
    Tanno, Hidetaka
    McDaniel, Jonathan R.
    Stevens, Christopher A.
    Voss, William N.
    Li, Jie
    Durrett, Russell
    Lee, Jiwon
    Gollihar, Jimmy
    Tanno, Yuri
    Delidakis, George
    Pothukuchy, Arti
    Ellefson, Jared W.
    Goronzy, Jorg J.
    Maynard, Jennifer A.
    Ellington, Andrew D.
    Ippolito, Gregory C.
    Georgiou, George
    SCIENCE ADVANCES, 2020, 6 (17)
  • [24] LightAssembler: fast and memory-efficient assembly algorithm for high-throughput sequencing reads
    El-Metwally, Sara
    Zakaria, Magdi
    Hamza, Taher
    BIOINFORMATICS, 2016, 32 (21) : 3215 - 3223
  • [25] Combinatorial Detection Algorithm for Copy Number Variations Using High-throughput Sequencing Reads
    Yang, Hai
    Zhu, Daming
    INTERNATIONAL JOURNAL OF PATTERN RECOGNITION AND ARTIFICIAL INTELLIGENCE, 2019, 33 (14)
  • [26] Combinatorial detection algorithm for copy number variations using high-throughput sequencing reads
    Yang H.
    Zhu D.
    International Journal of Pattern Recognition and Artificial Intelligence, 2019, 33 (14):
  • [27] ReportingTools: an automated result processing and presentation toolkit for high-throughput genomic analyses
    Huntley, Melanie A.
    Larson, Jessica L.
    Chaivorapol, Christina
    Becker, Gabriel
    Lawrence, Michael
    Hackney, Jason A.
    Kaminker, Joshua S.
    BIOINFORMATICS, 2013, 29 (24) : 3220 - 3221
  • [28] BLESS: Bloom filter-based error correction solution for high-throughput sequencing reads
    Heo, Yun
    Wu, Xiao-Long
    Chen, Deming
    Ma, Jian
    Hwu, Wen-Mei
    BIOINFORMATICS, 2014, 30 (10) : 1354 - 1362
  • [29] Efficiently developing a large set of polymorphic EST-SSR markers for Xanthoceras sorbifolium by mining raw reads from high-throughput sequencing
    Bi, Quanxin
    Mao, Jian-Feng
    Guan, Wenbin
    CONSERVATION GENETICS RESOURCES, 2015, 7 (02) : 423 - 425
  • [30] High-Throughput Sequencing Technologies
    Reuter, Jason A.
    Spacek, Damek V.
    Snyder, Michael P.
    MOLECULAR CELL, 2015, 58 (04) : 586 - 597
12345