MSA-PAD: DNA multiple sequence alignment framework based on PFAM accessed domain information

被引:4
|
作者
Balech, Bachir [1 ]
Vicario, Saverio [2 ]
Donvito, Giacinto [3 ]
Monaco, Alfonso [3 ]
Notarangelo, Pasquale [3 ]
Pesole, Graziano [1 ,4 ]
机构
[1] CNR, Ist Biomembrane & Bioenerget, I-70126 Bari, Italy
[2] CNR, Ist Tecnol Biomed, I-70126 Bari, Italy
[3] Ist Nazl Fis Nucl, I-70126 Bari, Italy
[4] Univ Bari, Dipartimento Biosci Biotecnol & Biofarmaceut, I-70126 Bari, Italy
基金
欧盟第七框架计划;
关键词
D O I
10.1093/bioinformatics/btv141
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Here we present the MSA-PAD application, a DNA multiple sequence alignment framework that uses PFAM protein domain information to align DNA sequences encoding either single or multiple protein domains. MSA-PAD has two alignment options: gene and genome mode.
引用
收藏
页码:2571 / 2573
页数:3
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