While the first part of this series focuses on the application of the proposed formulation to scheduling, this paper focuses mainly on the integration of planning and scheduling in multipurpose batch plants. In dealing with this problem, the method presented in this paper exploits the mathematical structure of the overall plant model. It is discovered that the overall model exhibits a block angular structure that is decomposed by raw material allocation. If raw materials can be allocated optimally to individual plants, solving individual models for each plant can produce the same results as solving an overall model for the site. This discovery leads to a decomposition strategy that consists of two levels. In the first level, only planning decisions are made, and the objective function is the maximization of the overall profit. The results from solving the planning model give optimal raw material allocation to different plants. In the second level, the raw material targets from the first (planning) level are incorporated into the scheduling submodels for each plant, which are solved independently without compromising global optimality. The objective function for each scheduling submodel is the maximization of product throughput. The scheduling level uses the concept of the state sequence network presented in part 1. Solving scheduling submodels for individual plants rather than the overall, site model leads to problems with much a smaller number of binary variables and, hence, shorter CPU times. If conflicts arise, i.e., the planning targets are too optimistic to be realized at the scheduling level, the planning model is revisited with more realistic targets. This eventually becomes an iterative procedure that terminates once the planning and scheduling solutions converge within a specified tolerance. In this way, the planning model acts as coordination for scheduling models for individual plants. An industrial case study with three chemical processes is presented to demonstrate the effectiveness of this approach.