pamlX: A Graphical User Interface for PAML

被引：279
|
作者：
Xu, Bo [1 ,2 ]
Yang, Ziheng [1 ,2 ,3 ]
机构：
[1] Chinese Acad Sci, Beijing Inst Genom, Ctr Computat Genom, Beijing, Peoples R China
[2] Chinese Acad Sci, Inst Zool, Ctr Computat & Evolutionary Biol, Beijing, Peoples R China
[3] UCL, Dept Genet Evolut & Environm, London, England
来源：
MOLECULAR BIOLOGY AND EVOLUTION | 2013年 / 30卷 / 12期
基金：
英国生物技术与生命科学研究理事会;
关键词：
phylogenetics; molecular evolution; software; AMINO-ACID SITES; DETECTING POSITIVE SELECTION; CODON-SUBSTITUTION MODELS; MAXIMUM-LIKELIHOOD; PHYLOGENETIC ANALYSIS; MOLECULAR CLOCK; SEQUENCE DATA; INFERENCE; DIVERGENCE; EVOLUTION;
D O I：
10.1093/molbev/mst179
中图分类号：
Q5 [生物化学]; Q7 [分子生物学];
学科分类号：
071010 ; 081704 ;
摘要：
This note announces PAMLX, a graphical user interface/front end for the PAML (for Phylogenetic Analysis by Maximum Likelihood) program package (Yang Z. 1997. PAML: a program package for phylogenetic analysis by maximum likelihood. Comput Appl Biosci. 13: 555-556; Yang Z. 2007. PAML 4: Phylogenetic analysis by maximum likelihood. Mol Biol Evol. 24: 1586-1591). PAMLX is written in C++ using the Qt library and communicates with PAML programs through files. It can be used to create, edit, and print control files for PAML programs and to launch PAML runs. The interface is available for free download at http://abacus.gene.ucl.ac.uk/software/paml.html.
引用
收藏
页码：2723 / 2724
页数：2
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