Translational Bioinformatics for Diagnostic and Prognostic Prediction of Prostate Cancer in the Next-Generation Sequencing Era

被引:24
|
作者
Chen, Jiajia [1 ,2 ]
Zhang, Daqing [1 ]
Yan, Wenying [1 ]
Yang, Dongrong [3 ]
Shen, Bairong [1 ]
机构
[1] Soochow Univ, Ctr Syst Biol, Suzhou 215006, Peoples R China
[2] Suzhou Univ Sci & Technol, Sch Chem Biol & Mat Engn, Suzhou 215011, Peoples R China
[3] Soochow Univ, Dept Urol, Affiliated Hosp 2, Suzhou 215004, Peoples R China
基金
中国国家自然科学基金; 高等学校博士学科点专项科研基金; 国家高技术研究发展计划(863计划);
关键词
GENE FUSIONS; SOLUBLE RECEPTOR; PLASMA-LEVELS; COPY NUMBER; GENOMIC ALTERATIONS; DNA METHYLATION; EXPRESSION; PROGRESSION; REVEALS; MUTATIONS;
D O I
10.1155/2013/901578
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The discovery of prostate cancer biomarkers has been boosted by the advent of next-generation sequencing (NGS) technologies. Nevertheless, many challenges still exist in exploiting the flood of sequence data and translating them into routine diagnostics and prognosis of prostate cancer. Here we review the recent developments in prostate cancer biomarkers by high throughput sequencing technologies. We highlight some fundamental issues of translational bioinformatics and the potential use of cloud computing in NGS data processing for the improvement of prostate cancer treatment.
引用
收藏
页数:13
相关论文
共 50 条
  • [21] Next-Generation Sequencing to characterize tumor genomics in Prostate Cancer
    Vazquez-Cardenas, Pamela
    Arroyo-Garrapucho, Nuria
    Luis Garcia, Juan
    Angel Corchete, Luis
    Berrocal-Navarro, Pablo
    Jesus Virseda-Rodriguez, Alvaro
    Marcos-Asensio, Sara
    Antunez, Patricia
    Belen Herrero, Ana
    Gomez-Veiga, Francisco
    Jesus Cruz-Hernandez, Juan
    Gonzalez-Sarmiento, Rogelio
    [J]. EUROPEAN JOURNAL OF HUMAN GENETICS, 2022, 30 (SUPPL 1) : 425 - 425
  • [22] Next-Generation Sequencing in Cancer
    Nair, S. Vinod
    Madhulaxmi
    Thomas, Gigi
    Ankathil, Ravindran
    [J]. JOURNAL OF MAXILLOFACIAL & ORAL SURGERY, 2021, 20 (03): : 340 - 344
  • [23] Microsatellite instability in prostate cancer by PCR or next-generation sequencing
    Hempelmann, Jennifer A.
    Lockwood, Christina M.
    Konnick, Eric Q.
    Schweizer, Michael T.
    Antonarakis, Emmanuel S.
    Lotan, Tamara L.
    Montgomery, Bruce
    Nelson, Peter S.
    Klemfuss, Nola
    Salipante, Stephen J.
    Pritchard, Colin C.
    [J]. JOURNAL FOR IMMUNOTHERAPY OF CANCER, 2018, 6
  • [24] An Evaluation of Next-Generation Sequencing for Diagnostic Use in Cancer Care
    Wang, K.
    Yelensky, R.
    Dogan, S.
    Borsu, L.
    Frampton, G. M.
    Lipson, D.
    Bastian, B.
    Klimstra, D.
    Ladanyi, M.
    Stephens, P.
    Cronin, M.
    Berger, M.
    [J]. JOURNAL OF MOLECULAR DIAGNOSTICS, 2012, 14 (06): : 711 - 711
  • [25] A Clinician's Guide to Bioinformatics for Next-Generation Sequencing
    Larson, Nicholas Bradley
    Oberg, Ann L.
    Adjei, Alex A.
    Wang, Liguo
    [J]. JOURNAL OF THORACIC ONCOLOGY, 2023, 18 (02) : 143 - 157
  • [26] A Bioinformatics Toolkit for Next-Generation Sequencing in Clinical Oncology
    Cabello-Aguilar, Simon
    Vendrell, Julie A.
    Solassol, Jerome
    [J]. CURRENT ISSUES IN MOLECULAR BIOLOGY, 2023, 45 (12) : 9737 - 9752
  • [27] Next-generation sequencing and bioinformatics in rare movement disorders
    Zech, Michael
    Winkelmann, Juliane
    [J]. NATURE REVIEWS NEUROLOGY, 2024, 20 (02) : 114 - 126
  • [28] Next-generation sequencing and bioinformatics in rare movement disorders
    Michael Zech
    Juliane Winkelmann
    [J]. Nature Reviews Neurology, 2024, 20 : 114 - 126
  • [29] Unrevealed mosaicism in the next-generation sequencing era
    Marzena Gajecka
    [J]. Molecular Genetics and Genomics, 2016, 291 : 513 - 530
  • [30] Linkage Analysis in the Next-Generation Sequencing Era
    Bailey-Wilson, Joan E.
    Wilson, Alexander F.
    [J]. HUMAN HEREDITY, 2011, 72 (04) : 228 - 236