CSI-Microbes: Identifying cell-type specific intracellular microbes from single-cell RNA-seq data

被引:0
|
作者
Robinson, Welles [1 ]
Schischlik, Fiorella [1 ]
Gertz, E. Michael [1 ]
Lee, Joo S. [2 ]
Zhu, Kaiyuan [1 ]
Sahinalp, S. Cenk [1 ]
Patro, Rob [3 ]
Leiserson, Mark D. [3 ]
Schaffer, Alejandro A. [1 ]
Ruppin, Eytan [1 ]
机构
[1] NCI, Bethesda, MD USA
[2] Sungkyunkwan Univ, Sch Med, Suwon, South Korea
[3] Univ Maryland, College Pk, MD USA
关键词
D O I
暂无
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
3048
引用
收藏
页数:1
相关论文
共 50 条
  • [31] Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data
    Qianhui Huang
    Yu Liu
    Yuheng Du
    Lana X.Garmire
    Genomics,Proteomics & Bioinformatics, 2021, 19 (02) : 267 - 281
  • [32] scReClassify: post hoc cell type classification of single-cell rNA-seq data
    Taiyun Kim
    Kitty Lo
    Thomas A. Geddes
    Hani Jieun Kim
    Jean Yee Hwa Yang
    Pengyi Yang
    BMC Genomics, 20
  • [33] scReClassify: post hoc cell type classification of single-cell rNA-seq data
    Kim, Taiyun
    Lo, Kitty
    Geddes, Thomas A.
    Kim, Hani Jieun
    Yang, Jean Yee Hwa
    Yang, Pengyi
    BMC GENOMICS, 2019, 20 (Suppl 9)
  • [34] Comparative Analysis of Supervised Cell Type Detection in Single-Cell RNA-seq Data
    Vasighizaker, Akram
    Hora, Sheena
    Trivedi, Yash
    Rueda, Luis
    BIOINFORMATICS AND BIOMEDICAL ENGINEERING, PT II, 2022, : 333 - 345
  • [35] Comparison of transformations for single-cell RNA-seq data
    Constantin Ahlmann-Eltze
    Wolfgang Huber
    Nature Methods, 2023, 20 : 665 - 672
  • [36] Evaluation of Cell Type Annotation R Packages on Single-cell RNA-seq Data
    Qianhui Huang
    Yu Liu
    Yuheng Du
    Lana XGarmire
    Genomics,Proteomics & Bioinformatics, 2021, (02) : 267 - 281
  • [37] Application of bioinformatic tools in cell type classification for single-cell RNA-seq data
    Sujana, Shah Tania Akter
    Shahjaman, Md.
    Singha, Atul Chandra
    COMPUTATIONAL BIOLOGY AND CHEMISTRY, 2025, 115
  • [38] Computational analysis of alternative polyadenylation from standard RNA-seq and single-cell RNA-seq data
    Gao, Yipeng
    Li, Wei
    MRNA 3' END PROCESSING AND METABOLISM, 2021, 655 : 225 - 243
  • [39] SCRABBLE: single-cell RNA-seq imputation constrained by bulk RNA-seq data
    Peng, Tao
    Zhu, Qin
    Yin, Penghang
    Tan, Kai
    GENOME BIOLOGY, 2019, 20 (1)
  • [40] Comparison of transformations for single-cell RNA-seq data
    Ahlmann-Eltze, Constantin
    Huber, Wolfgang
    NATURE METHODS, 2023, 20 (05) : 665 - +