Pathway Curation: Application of Text-Mining Tools eGIFT and RLIMS-P

被引：0

作者：

Schmidt, Carl J. ^{[1
]}

Sun, Liang ^{[1
]}

Arighi, Cecilia N. ^{[2
,3
]}

Decker, Keith ^{[2
]}

Vijay-Shanker, K. ^{[2
]}

Torii, Manabu ^{[2
,3
]}

Tudor, Catalina O. ^{[3
]}

Wu, Cathy ^{[3
]}

D'Eustachio, Peter ^{[2
,4
]}

机构：

[1] Univ Delaware, Dept Anim & Food Sci, Newark, DE 19716 USA

[2] Univ Delaware, Dept Comp & Informat Sci, Newark, DE 19716 USA

[3] Univ Delaware, Ctr Bioinformat & Computat Biol, Newark, DE 19716 USA

[4] New York Univ Sch Med, Dept Biochem, New York, NY USA

来源：

2012 IEEE INTERNATIONAL CONFERENCE ON BIOINFORMATICS AND BIOMEDICINE WORKSHOPS (BIBMW) | 2012年

关键词：

pathway curation; computational linguistics; orthology prediction; HUMAN BIOLOGICAL PATHWAYS; TGF-BETA; PROTEIN-PHOSPHORYLATION; REACTOME KNOWLEDGEBASE; RECEPTOR KINASE; CHICKEN-EMBRYO; EXPRESSION; ENDOGLIN; INFORMATION; INHIBITION;

D O I：

暂无

中图分类号：

TP39 [计算机的应用];

学科分类号：

081203 ; 0835 ;

摘要：

Gallus Reactome provides a manually curated reference database for chicken signaling and metabolic pathways. Providing such a high-quality reference database requires significant time input from both curators and pathway experts. This paper describes the application of orthology prediction, computational linguistic tools including text mining and information extraction applications, along with resources available from the Protein Information Resource, to facilitate pathway curation. In this paper, we describe these methods in the context of curating the chicken TGF beta signaling pathway.

引用

页数：6

共 38 条

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