Molecular evolution of attachment glycoprotein (G) gene in human respiratory syncytial virus detected in Japan 2008-2011

被引：32

作者：

Kushibuchi, Izumi ^{[1
]}

Kobayashi, Miho ^{[2
]}

Kusaka, Takashi ^{[3
]}

Tsukagoshi, Hiroyuki ^{[2
]}

Ryo, Akihide ^{[4
]}

Yoshida, Ayako ^{[5
]}

Ishii, Haruyuki ^{[6
]}

Saraya, Takeshi ^{[6
]}

Kurai, Daisuke ^{[6
]}

Yamamoto, Norio ^{[7
]}

Kanou, Kazuhiko ^{[8
]}

Saitoh, Mika ^{[2
]}

Noda, Masahiro ^{[8
]}

Kuroda, Makoto ^{[9
]}

Morita, Yukio ^{[10
]}

Kozawa, Kunihisa ^{[2
]}

Oishi, Kazunori ^{[8
]}

Tashiro, Masato ^{[7
]}

Kimura, Hirokazu ^{[8
]}

机构：

[1] Tochigi Prefectural Inst Publ Hlth, Utsunomiya, Tochigi 3291196, Japan

[2] Gunma Prefectural Inst Publ Hlth & Environm Sci, Maebashi, Gunma 3710052, Japan

[3] Kagawa Univ, Fac Med, Maternal Perinatal Ctr, Miki, Kagawa 7610793, Japan

[4] Yokohama City Univ, Grad Sch Med, Dept Mol Biodef Res, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan

[5] Aomori Prefectural Inst Publ Hlth & Environm, Aomori 0308566, Japan

[6] Kyorin Univ, Sch Med, Dept Resp Med, Mitaka, Tokyo 1818611, Japan

[7] Natl Inst Infect Dis, Influenza Virus Res Ctr, Musashimurayama, Tokyo 2080011, Japan

[8] Natl Inst Infect Dis, Infect Dis Surveillance Ctr, Musashimurayama, Tokyo 2080011, Japan

[9] Natl Inst Infect Dis, Pathogen Genom Ctr, Musashimurayama, Tokyo 2080011, Japan

[10] Tokyo Kasei Univ, Dept Nutr Sci, Itabashi Ku, Tokyo 1738602, Japan

来源：

INFECTION GENETICS AND EVOLUTION | 2013年 / 18卷

基金：

日本学术振兴会;

关键词：

Respiratory syncytial virus; G gene; Time-scaled phylogeny; Bayesian Markov Chain Monte Carlo method; Positively selected site; Pairwise distance; G-PROTEIN; PHYLOGENETIC ANALYSIS; CLINICAL-SAMPLES; SUBGROUP-A; INFECTION; CHILDREN; IDENTIFICATION; BRONCHIOLITIS; DUPLICATION; VARIABILITY;

D O I：

10.1016/j.meegid.2013.05.010

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

We investigated the evolution of the C-terminal 3rd hypervariable region of G gene in the prevalent human respiratory syncytial virus (RSV) subgroups A (RSV-A) and B (RSV-B) in Japan in 2008-2011. Phylogenetic analysis and the evolutionary timescale was obtained by the Bayesian Markov Chain Monte Carlo method. All 38 RSV-A strains detected were classified into genotype NA1 and the 17 RSV-B strains detected belonged to genotypes BA and GB2. NA1 subdivided around 1998 in the present phylogenetic tree. Genotype BA subdivided around 1994. The evolutionary rates for RSV-A and RSV-B were estimated at 3.63 x 10(-3) and 4.56 x 10(-3) substitutions/site/year, respectively. The mean evolutionary rate of RSV-B was significantly faster than that of RSV-A during all seasons. The pairwise distance was relatively short (less than 0.06). In addition, some unique sites under positive selection were found. The results suggested that this region of the RSV strains rapidly evolved with some unique amino acid substitutions due to positive pressure. (C) 2013 Elsevier B.V. All rights reserved.

引用

页码：168 / 173

页数：6

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