Molecular evolution of attachment glycoprotein (G) gene in human respiratory syncytial virus detected in Japan 2008-2011

被引：32

作者：

Kushibuchi, Izumi ^{[1
]}

Kobayashi, Miho ^{[2
]}

Kusaka, Takashi ^{[3
]}

Tsukagoshi, Hiroyuki ^{[2
]}

Ryo, Akihide ^{[4
]}

Yoshida, Ayako ^{[5
]}

Ishii, Haruyuki ^{[6
]}

Saraya, Takeshi ^{[6
]}

Kurai, Daisuke ^{[6
]}

Yamamoto, Norio ^{[7
]}

Kanou, Kazuhiko ^{[8
]}

Saitoh, Mika ^{[2
]}

Noda, Masahiro ^{[8
]}

Kuroda, Makoto ^{[9
]}

Morita, Yukio ^{[10
]}

Kozawa, Kunihisa ^{[2
]}

Oishi, Kazunori ^{[8
]}

Tashiro, Masato ^{[7
]}

Kimura, Hirokazu ^{[8
]}

机构：

[1] Tochigi Prefectural Inst Publ Hlth, Utsunomiya, Tochigi 3291196, Japan

[2] Gunma Prefectural Inst Publ Hlth & Environm Sci, Maebashi, Gunma 3710052, Japan

[3] Kagawa Univ, Fac Med, Maternal Perinatal Ctr, Miki, Kagawa 7610793, Japan

[4] Yokohama City Univ, Grad Sch Med, Dept Mol Biodef Res, Kanazawa Ku, Yokohama, Kanagawa 2360004, Japan

[5] Aomori Prefectural Inst Publ Hlth & Environm, Aomori 0308566, Japan

[6] Kyorin Univ, Sch Med, Dept Resp Med, Mitaka, Tokyo 1818611, Japan

[7] Natl Inst Infect Dis, Influenza Virus Res Ctr, Musashimurayama, Tokyo 2080011, Japan

[8] Natl Inst Infect Dis, Infect Dis Surveillance Ctr, Musashimurayama, Tokyo 2080011, Japan

[9] Natl Inst Infect Dis, Pathogen Genom Ctr, Musashimurayama, Tokyo 2080011, Japan

[10] Tokyo Kasei Univ, Dept Nutr Sci, Itabashi Ku, Tokyo 1738602, Japan

来源：

INFECTION GENETICS AND EVOLUTION | 2013年 / 18卷

基金：

日本学术振兴会;

关键词：

Respiratory syncytial virus; G gene; Time-scaled phylogeny; Bayesian Markov Chain Monte Carlo method; Positively selected site; Pairwise distance; G-PROTEIN; PHYLOGENETIC ANALYSIS; CLINICAL-SAMPLES; SUBGROUP-A; INFECTION; CHILDREN; IDENTIFICATION; BRONCHIOLITIS; DUPLICATION; VARIABILITY;

D O I：

10.1016/j.meegid.2013.05.010

中图分类号：

R51 [传染病];

学科分类号：

100401 ;

摘要：

We investigated the evolution of the C-terminal 3rd hypervariable region of G gene in the prevalent human respiratory syncytial virus (RSV) subgroups A (RSV-A) and B (RSV-B) in Japan in 2008-2011. Phylogenetic analysis and the evolutionary timescale was obtained by the Bayesian Markov Chain Monte Carlo method. All 38 RSV-A strains detected were classified into genotype NA1 and the 17 RSV-B strains detected belonged to genotypes BA and GB2. NA1 subdivided around 1998 in the present phylogenetic tree. Genotype BA subdivided around 1994. The evolutionary rates for RSV-A and RSV-B were estimated at 3.63 x 10(-3) and 4.56 x 10(-3) substitutions/site/year, respectively. The mean evolutionary rate of RSV-B was significantly faster than that of RSV-A during all seasons. The pairwise distance was relatively short (less than 0.06). In addition, some unique sites under positive selection were found. The results suggested that this region of the RSV strains rapidly evolved with some unique amino acid substitutions due to positive pressure. (C) 2013 Elsevier B.V. All rights reserved.

引用

页码：168 / 173

页数：6

共 50 条

[1] Genetic analysis of attachment glycoprotein (G) gene in new genotype ON1 of human respiratory syncytial virus detected in Japan
Tsukagoshi, Hiroyuki
Yokoi, Hajime
Kobayashi, Miho
Kushibuchi, Izumi
Okamoto-Nakagawa, Reiko
Yoshida, Ayako
Morita, Yukio
Noda, Masahiro
Yamamoto, Norio
Sugai, Kazuko
Oishi, Kazunori
Kozawa, Kunihisa
Kuroda, Makoto
Shirabe, Komei
Kimura, Hirokazu
[J]. MICROBIOLOGY AND IMMUNOLOGY, 2013, 57 (09) : 655 - 659
[2] Molecular epidemiology of the attachment glycoprotein (G) gene in respiratory syncytial virus in children with acute respiratory infection in Japan in 2009/2010
Yoshida, Ayako
Kiyota, Naoko
Kobayashi, Miho
Nishimura, Koichi
Tsutsui, Rika
Tsukagoshi, Hiroyuki
Hirano, Eiko
Yamamoto, Norio
Ryo, Akihide
Saitoh, Mika
Harada, Seiya
Inoue, Osamu
Kozawa, Kunihisa
Tanaka, Ryota
Noda, Masahiro
Okabe, Nobuhiko
Tashiro, Masato
Mizuta, Katsumi
Kimura, Hirokazu
[J]. JOURNAL OF MEDICAL MICROBIOLOGY, 2012, 61 (06) : 820 - 829
[3] Tracing the emerging genotypes of human respiratory syncytial virus in Beijing by evolution analysis of the attachment glycoprotein (G) gene
Zhang, Tuohui
Qian, Yuan
Deng, Jie
Zhu, Runan
Wang, Fang
Sun, Yu
Ding, Yaxin
Tian, Run
Zhao, Linqing
[J]. INFECTION GENETICS AND EVOLUTION, 2018, 65 : 18 - 27
[4] Molecular evolution and circulation patterns of human respiratory syncytial virus subgroup A: Positively selected sites in the attachment G glycoprotein
Zlateva, KT
Lerney, P
Vandamme, AM
Van Ranst, M
[J]. JOURNAL OF VIROLOGY, 2004, 78 (09) : 4675 - 4683
[5] Molecular evolution of human respiratory syncytial virus attachment glycoprotein (G) gene of new genotype ON1 and ancestor NA1
Hirano, Eiko
Kobayashi, Miho
Tsukagoshi, Hiroyuki
Yoshida, Lay Myint
Kuroda, Makoto
Noda, Masahiro
Ishioka, Taisei
Kozawa, Kunihisa
Ishii, Haruyuki
Yoshida, Ayako
Oishi, Kazunori
Ryo, Akihide
Kimura, Hirokazu
[J]. INFECTION GENETICS AND EVOLUTION, 2014, 28 : 183 - 191
[6] Genetic variability and molecular evolution of the human respiratory syncytial virus subgroup B attachment G
Zlateva, KT
Lemey, P
Moës, E
Vandamme, AM
Van Ranst, M
[J]. JOURNAL OF VIROLOGY, 2005, 79 (14) : 9157 - 9167
[7] Molecular evolution of respiratory syncytial virus subgroup A genotype NA1 and ON1 attachment glycoprotein (G) gene in central Vietnam
Yoshihara, Keisuke
Minh Nhat Le
Nagasawa, Koo
Tsukagoshi, Hiroyuki
Hien Anh Nguyen
Toizumi, Michiko
Moriuchi, Hiroyuki
Hashizume, Masahiro
Ariyoshi, Koya
Duc Anh Dang
Kimura, Hirokazu
Yoshida, Lay-Myint
[J]. INFECTION GENETICS AND EVOLUTION, 2016, 45 : 437 - 446
[8] DEMONSTRATION THAT GLYCOPROTEIN-G IS THE ATTACHMENT PROTEIN OF RESPIRATORY SYNCYTIAL VIRUS
LEVINE, S
KLAIBERFRANCO, R
PARADISO, PR
[J]. JOURNAL OF GENERAL VIROLOGY, 1987, 68 : 2521 - 2524
[9] Identification of a linear heparin binding domain for human respiratory syncytial virus attachment glycoprotein G
Feldman, SA
Hendry, RM
Beeler, JA
[J]. JOURNAL OF VIROLOGY, 1999, 73 (08) : 6610 - 6617
[10] Enhanced neutralization of human respiratory syncytial virus by mixtures of monoclonal antibodies to the attachment (G) glycoprotein
Martínez, I
Melero, JA
[J]. JOURNAL OF GENERAL VIROLOGY, 1998, 79 : 2215 - 2220

← 1 2 3 4 5 →