NMR assignment of the nonstructural protein nsp3(1066-1181) from SARS-CoV

被引:4
|
作者
Serrano, Pedro [1 ]
Johnson, Margaret A. [1 ]
Chatterjee, Amarnath [1 ]
Pedrini, Bill [1 ]
Wuethrich, Kurt [1 ,2 ]
机构
[1] Scripps Res Inst, Dept Mol Biol, La Jolla, CA 92037 USA
[2] Scripps Res Inst, Skaggs Inst Chem Biol, La Jolla, CA 92037 USA
关键词
Severe acute respiratory syndrome; SARS coronavirus; Nonstructural protein; NMR structure determination;
D O I
10.1007/s12104-008-9104-x
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
Sequence-specific NMR assignments of the globular core comprising the residues 1066-1181 within the non-structural protein nsp3e from the SARS coronavirus have been obtained using triple-resonance NMR experiments with the uniformly [C-13, N-15]-labeled protein. The backbone and side chain assignments are nearly complete, providing the basis for the ongoing NMR structure determination. A preliminary identification of regular secondary structures has been derived from the C-13 chemical shifts.
引用
收藏
页码:135 / 138
页数:4
相关论文
共 50 条
  • [41] Frequent occurrence of mutations in nsp3 and nsp4 of SARS-CoV-2, presumably caused by the inhaled asthma drug ciclesonide
    Doi, Akihiro
    Tomita, Yuriko
    Okura, Hiyori
    Matsuyama, Shutoku
    PNAS NEXUS, 2022, 1 (04):
  • [42] Structure of Nonstructural Protein 1 from SARS-CoV-2
    Clark, Lauren K.
    Green, Todd J.
    Petit, Chad M.
    JOURNAL OF VIROLOGY, 2021, 95 (04)
  • [43] The SARS-unique domain (SUD) of SARS-CoV-2 nsp3 protein inhibits the antiviral immune responses through the NF-κB pathway
    Xie, Siyi
    Song, Zheng
    Chen, Ran
    Zhang, Xu
    Wu, Shuangxin
    Chen, Jingliang
    Huang, Peiming
    Liu, Hanxin
    Yu, Kaixin
    Zhang, Yixin
    Tan, Siyu
    Liu, Jun
    Ma, Xiancai
    Zhang, Hui
    He, Xin
    Pan, Ting
    JOURNAL OF MEDICAL VIROLOGY, 2024, 96 (10)
  • [44] Subcellular localization and membrane association of SARS-CoV 3a protein
    Yuan, XL
    Li, JY
    Shan, YJ
    Yang, Z
    Zhao, ZH
    Chen, B
    Yao, ZY
    Dong, B
    Wang, SQ
    Chen, JP
    Cong, YW
    VIRUS RESEARCH, 2005, 109 (02) : 191 - 202
  • [45] Fragment binding to the Nsp3 macrodomain of SARS-CoV-2 identified through crystallographic screening and computational docking
    Schuller, Marion
    Correy, Galen J.
    Gahbauer, Stefan
    Fearon, Daren
    Wu, Taiasean
    Diaz, Roberto Efrain
    Young, Iris D.
    Martins, Luan Carvalho
    Smith, Dominique H.
    Schulze-Gahmen, Ursula
    Owens, Tristan W.
    Deshpande, Ishan
    Merz, Gregory E.
    Thwin, Aye C.
    Biel, Justin T.
    Peters, Jessica K.
    Moritz, Michelle
    Herrera, Nadia
    Kratochvil, Huong T.
    Aimon, Anthony
    Bennett, James M.
    Neto, Jose Brandao
    Cohen, Aina E.
    Dias, Alexandre
    Douangamath, Alice
    Dunnett, Louise
    Fedorov, Oleg
    Ferla, Matteo P.
    Fuchs, Martin R.
    Gorrie-Stone, Tyler J.
    Holton, James M.
    Johnson, Michael G.
    Krojer, Tobias
    Meig, George
    Powell, Ailsa J.
    Rack, Johannes Gregor Matthias
    Rangel, Victor L.
    Russi, Silvia
    Skyner, Rachael E.
    Smith, Clyde A.
    Soares, Alexei S.
    Wierman, Jennifer L.
    Zhu, Kang
    O'Brien, Peter
    Jura, Natalia
    Ashworth, Alan
    Irwin, John J.
    Thompson, Michael C.
    Gestwicki, Jason E.
    von Delft, Frank
    SCIENCE ADVANCES, 2021, 7 (16)
  • [46] Discovery of Drug-Like Ligands for the Mac1 Domain of SARS-CoV-2 Nsp3
    Virdi, Rajdeep S.
    Bavisotto, Robert V.
    Hopper, Nicholas C.
    Vuksanovic, Nemanja
    Melkonian, Trevor R.
    Silvaggi, Nicholas R.
    Frick, David N.
    SLAS DISCOVERY, 2020, 25 (10) : 1162 - 1170
  • [47] The impact of non-synonymous mutations on miRNA binding sites within the SARS-CoV-2 NSP3 and NSP4 genes
    Rad, S. M. Ali Hosseini
    Wannigama, Dhammika Leshan
    Hirankarn, Nattiya
    Mclellan, Alexander D.
    SCIENTIFIC REPORTS, 2023, 13 (01)
  • [48] The impact of non-synonymous mutations on miRNA binding sites within the SARS-CoV-2 NSP3 and NSP4 genes
    S. M. Ali Hosseini Rad
    Dhammika Leshan Wannigama
    Nattiya Hirankarn
    Alexander D. McLellan
    Scientific Reports, 13
  • [49] Modelling the Transitioning of SARS-CoV-2 nsp3 and nsp4 Lumenal Regions towards a More Stable State on Complex Formation
    Klatte, Nele
    Shields, Denis C. C.
    Agoni, Clement
    INTERNATIONAL JOURNAL OF MOLECULAR SCIENCES, 2023, 24 (01)
  • [50] Identification of the RNA-binding, dimerization, and eIF4GI-binding domains of rotavirus nonstructural protein NSP3
    Piron, M
    Delaunay, T
    Grosclaude, J
    Poncet, D
    JOURNAL OF VIROLOGY, 1999, 73 (07) : 5411 - 5421