Rapid and efficient large-scale somatic mutation validation approaches for cancer genome sequencing

被引:0
|
作者
Cibulskis, Kristian [1 ]
Sivachenko, Andrey [1 ]
Hammerman, Peter [2 ]
Imaz, Ivan [3 ]
Pugh, Trevor [1 ]
Sougnezl, Carrie [1 ]
Winckler, Wendy [1 ]
Gabriel, Stacey [1 ]
Getz, Gaddy [1 ]
机构
[1] Broad Inst, Cambridge, MA USA
[2] Dana Farber Canc Inst, Boston, MA 02115 USA
[3] Inst Nacl Med Genom, Mexico City, DF, Mexico
关键词
D O I
10.1158/1538-7445.AM2012-3960
中图分类号
R73 [肿瘤学];
学科分类号
100214 ;
摘要
3960
引用
收藏
页数:2
相关论文
共 50 条
  • [21] EFFICIENT AUTOMATED LARGE-SCALE SEQUENCING OF UNPURIFIED PCR PRODUCT
    TSUI, SKW
    WAYE, MMY
    LEE, CY
    BIOTECHNIQUES, 1995, 19 (04) : 577 - 578
  • [22] VarFish annotation capabilities extended for large-scale whole genome sequencing
    Einicke, Lara
    Zhao, Max Xiaohang
    Stolpe, Oliver
    Perez, Angela Abad
    Adam, Ronja
    Boschann, Felix
    Danyel, Magdalena
    Ehmke, Nadja
    Mensah, Martin Atta
    Schwartzmann, Sarina
    Sczakiel, Henrike
    Beule, Dieter
    Holtgrewe, Manuel
    EUROPEAN JOURNAL OF HUMAN GENETICS, 2024, 32 : 1671 - 1671
  • [23] Efficient large-scale screening for the hemochromatosis susceptibility gene mutation
    Takeuchi, T
    Soejima, H
    Faed, JM
    Yun, K
    BLOOD, 1997, 90 (07) : 2848 - 2849
  • [24] Large-scale profiling of microRNAs for The Cancer Genome Atlas
    Chu, Andy
    Robertson, Gordon
    Brooks, Denise
    Mungall, Andrew J.
    Birol, Inanc
    Coope, Robin
    Ma, Yussanne
    Jones, Steven
    Marra, Marco A.
    NUCLEIC ACIDS RESEARCH, 2016, 44 (01) : e3
  • [25] LARGE-SCALE DNA SEQUENCING
    HUNKAPILLER, T
    KAISER, RJ
    KOOP, BF
    HOOD, L
    CURRENT OPINION IN BIOTECHNOLOGY, 1991, 2 (01) : 92 - 101
  • [26] LARGE-SCALE DNA SEQUENCING
    MIDDENDORF, LR
    BRUMBAUGH, JA
    GRONE, DL
    MORGAN, CA
    RUTH, JL
    AMERICAN BIOTECHNOLOGY LABORATORY, 1988, 6 (06): : 14 - 22
  • [27] Large-scale genome editing in plants: approaches, applications, and future perspectives
    Liu, Tianzhen
    Zhang, Xuening
    Li, Kai
    Yao, Qi
    Zhong, Dating
    Deng, Qi
    Lu, Yuming
    CURRENT OPINION IN BIOTECHNOLOGY, 2023, 79
  • [28] An empirical Bayesian framework for somatic mutation detection from cancer genome sequencing data
    Shiraishi, Yuichi
    Sato, Yusuke
    Chiba, Kenichi
    Okuno, Yusuke
    Nagata, Yasunobu
    Yoshida, Kenichi
    Shiba, Norio
    Hayashi, Yasuhide
    Kume, Haruki
    Homma, Yukio
    Sanada, Masashi
    Ogawa, Seishi
    Miyano, Satoru
    NUCLEIC ACIDS RESEARCH, 2013, 41 (07)
  • [29] A comprehensive assessment of somatic mutation detection in cancer using whole-genome sequencing
    Alioto, Tyler S.
    Buchhalter, Ivo
    Derdak, Sophia
    Hutter, Barbara
    Eldridge, Matthew D.
    Hovig, Eivind
    Heisler, Lawrence E.
    Beck, Timothy A.
    Simpson, Jared T.
    Tonon, Laurie
    Sertier, Anne-Sophie
    Patch, Ann-Marie
    Jaeger, Natalie
    Ginsbach, Philip
    Drews, Ruben
    Paramasivam, Nagarajan
    Kabbe, Rolf
    Chotewutmontri, Sasithorn
    Diessl, Nicolle
    Previti, Christopher
    Schmidt, Sabine
    Brors, Benedikt
    Feuerbach, Lars
    Heinold, Michael
    Groebner, Susanne
    Korshunov, Andrey
    Tarpey, Patrick S.
    Butler, Adam P.
    Hinton, Jonathan
    Jones, David
    Menzies, Andrew
    Raine, Keiran
    Shepherd, Rebecca
    Stebbings, Lucy
    Teague, Jon W.
    Ribeca, Paolo
    Giner, Francesc Castro
    Beltran, Sergi
    Raineri, Emanuele
    Dabad, Marc
    Heath, Simon C.
    Gut, Marta
    Denroche, Robert E.
    Harding, Nicholas J.
    Yamaguchi, Takafumi N.
    Fujimoto, Akihiro
    Nakagawa, Hidewaki
    Quesada, Ctor
    Valdes-Mas, Rafael
    Nakken, Sigve
    NATURE COMMUNICATIONS, 2015, 6
  • [30] Detecting somatic point mutations in cancer genome sequencing data: a comparison of mutation callers
    Qingguo Wang
    Peilin Jia
    Fei Li
    Haiquan Chen
    Hongbin Ji
    Donald Hucks
    Kimberly Brown Dahlman
    William Pao
    Zhongming Zhao
    Genome Medicine, 5