Genome-wide identification of bZIP transcription factors and their responses to abiotic stress in celery

被引:9
|
作者
Yang, Qing-Qing
Feng, Kai
Xu, Zhi-Sheng
Duan, Ao-Qi
Liu, Jie-Xia
Xiong, Ai-Sheng
机构
[1] Nanjing Agr Univ, State Key Lab Crop Genet & Germplasm Enhancement, Minist Agr, Coll Hort, Nanjing, Jiangsu, Peoples R China
[2] Nanjing Agr Univ, Rural Affairs Key Lab Biol & Germplasm Enhancemen, Coll Hort, Nanjing, Jiangsu, Peoples R China
基金
中国国家自然科学基金;
关键词
abiotic stress; bZIP; celery; expression profiles; evolution; transcription factors; LEUCINE ZIPPER; GENE FAMILY; DNA; ROLES; EXPRESSION; PROLINE; DOMAIN;
D O I
10.1080/13102818.2019.1611386
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
Celery (Apium graveolens L.) is one of the most important vegetables in the Apiaceae family, rich in nutrients and widely grown around the world. bZIP transcription factors family plays an important role in the transcription regulation of plant growth and development, as well as adaptation to the external environment. In this paper, 62 bZIP family transcription factors were screened and identified based on the whole genome sequence of celery. The bZIP proteins of celery and Arabidopsis thaliana were divided into 10 subfamilies according to the phylogenetic tree. Phylogenetic and evolutionary analysis showed that the number of bZIP family members gradually expanded from lower plants to higher plants during the long evolution process. Based on the homology of celery and A. thaliana bZIP genes, the interaction network between celery bZIP transcription factors and other proteins in the genome was constructed, and the correlation data of protein interaction were also obtained. The expression profiles of 12 selected AgbZIP genes were detected and analyzed under abiotic stress treatments and different tissues using RT-qPCR. The results showed that AgbZIP can respond to high temperature, low temperature, drought, and high salt stress.
引用
收藏
页码:707 / 718
页数:12
相关论文
共 50 条
  • [1] Genome-wide identification of bZIP transcription factors and their expression analysis in Platycodon grandiflorus under abiotic stress
    Wang, Zhen
    Wang, Panpan
    Cao, Huiyan
    Liu, Meiqi
    Kong, Lingyang
    Wang, Honggang
    Ren, Weichao
    Fu, Qifeng
    Ma, Wei
    FRONTIERS IN PLANT SCIENCE, 2024, 15
  • [2] Genome-wide identification and analysis of ERF transcription factors related to abiotic stress responses in Nelumbo nucifera
    Xu, Yingchun
    Jiang, Junnan
    Zeng, Lihong
    Liu, Huan
    Jin, Qijiang
    Zhou, Ping
    Wang, Yanjie
    BMC PLANT BIOLOGY, 2024, 24 (01):
  • [3] Genome-wide Analysis of bZIP Transcription Factors in wheat and Functional Characterization of a TabZIP under Abiotic Stress
    Agarwal, Preeti
    Baranwal, Vinay Kumar
    Khurana, Paramjit
    SCIENTIFIC REPORTS, 2019, 9 (1)
  • [4] Genome-wide Analysis of bZIP Transcription Factors in wheat and Functional Characterization of a TabZIP under Abiotic Stress
    Preeti Agarwal
    Vinay Kumar Baranwal
    Paramjit Khurana
    Scientific Reports, 9
  • [5] Genome-wide identification of WRKY, bZIP, SBP, and bHLH transcription factors in kiwifruit (Actinidia spp.) and analysis of some responses to biotic and abiotic stress
    Jing, Z. B.
    Liu, Z. D.
    Yao, C. C.
    Wang, X.
    IX INTERNATIONAL SYMPOSIUM ON KIWIFRUIT, 2018, 1218 : 91 - 99
  • [6] Genome-Wide Identification and Expression Analysis of bZIP Transcription Factors Under Salt Stress in Chrysanthemum
    Guo, Yanchao
    Ji, Kexin
    Jia, Zhongqi
    Aiwaili, Palinuer
    Liu, Lin
    Ren, Haoran
    Liu, Qinglin
    Jiang, Yunhe
    Gao, Junping
    Xu, Yanjie
    HORTICULTURAE, 2024, 10 (12)
  • [7] Genome-Wide Identification and Characterization of bZIP Transcription Factors in Brassica oleracea under Cold Stress
    Hwang, Indeok
    Manoharan, Ranjith Kumar
    Kang, Jong-Goo
    Chung, Mi-Young
    Kim, Young-Wook
    Nou, Ill-Sup
    BIOMED RESEARCH INTERNATIONAL, 2016, 2016
  • [8] Genomic identification of group A bZIP transcription factors and their responses to abiotic stress in carrot
    Que, F.
    Wang, G. L.
    Huang, Y.
    Xu, Z. S.
    Wang, F.
    Xiong, A. S.
    GENETICS AND MOLECULAR RESEARCH, 2015, 14 (04): : 13274 - 13288
  • [9] Genome-wide analysis of WRKY transcription factors and their response to abiotic stress in celery (Apium graveolens L.)
    Wu, Bei
    Li, Meng-Yao
    Xu, Zhi-Sheng
    Wang, Feng
    Xiong, Ai-Sheng
    BIOTECHNOLOGY & BIOTECHNOLOGICAL EQUIPMENT, 2018, 32 (02) : 293 - 302
  • [10] Genome-wide identification and expression analysis of bZIP transcription factors in oil palm (Elaeis guineensis Jacq.) under abiotic stress
    Zhou, Lixia
    Yarra, Rajesh
    PROTOPLASMA, 2022, 259 (02) : 469 - 483