Extremal Distances for Subtree Transfer Operations in Binary Trees

被引:8
|
作者
Atkins, Ross [1 ]
McDiarmid, Colin [1 ]
机构
[1] Univ Oxford, Dept Stat, 24-29 St Giles, Oxford OX1 3LB, England
关键词
Phylogenetic tree; Subtree prune and regraft; Tree bisection and reconnection; Binary tree; Agreement forest; Tree rearrangement; Extremal distance; Average distance;
D O I
10.1007/s00026-018-0410-4
中图分类号
O29 [应用数学];
学科分类号
070104 ;
摘要
Three standard subtree transfer operations for binary trees, used in particular for phylogenetic trees, are: tree bisection and reconnection (TBR), subtree prune and regraft (SPR), and rooted subtree prune and regraft (rSPR). We show that for a pair of leaf-labelled binary trees with n leaves, the maximum number of such moves required to transform one into the other is n-, extending a result of Ding, Grunewald, and Humphries, and this holds also if one of the trees is fixed arbitrarily. If the pair is chosen uniformly at random, then the expected number of moves required is n-(n2/3). These results may be phrased in terms of agreement forests: we also give extensions for more than two binary trees.
引用
收藏
页码:1 / 26
页数:26
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