Deep Learning Models Explore the Structural Effects of Transcription Factor-DNA Complexes on Binding Specificity

被引:0
|
作者
Shimko, Tyler C. [1 ]
Fordyce, Polly M. [1 ]
机构
[1] Stanford Univ, Genet, Stanford, CA 94305 USA
关键词
D O I
10.1016/j.bpj.2018.11.2714
中图分类号
Q6 [生物物理学];
学科分类号
071011 ;
摘要
2494-Pos
引用
收藏
页码:503A / 503A
页数:1
相关论文
共 50 条
  • [31] An SVM-based method for assessment of transcription factor-DNA complex models
    Corona, Rosario I.
    Sudarshan, Sanjana
    Aluru, Srinivas
    Guo, Jun-tao
    BMC BIOINFORMATICS, 2018, 19
  • [32] Structural basis for DNA recognition and binding specificity by the transcription factor Ets2
    Suwa, Yoshiaki
    Nakamura, Teruya
    Toma, Sachiko
    Koga, Tomoaki
    Shuto, Tsuyoshi
    Ikemizu, Shinji
    Kai, Hirofumi
    Morioka, Hiroshi
    Yamagata, Yuriko
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2011, 67 : C689 - C689
  • [33] The binding and specificity of transcription factor max with DNA oligonucleotides
    Hu, JZ
    Goss, DJ
    BIOPHYSICAL JOURNAL, 2002, 82 (01) : 467A - 467A
  • [34] Cytosine arabinoside substitution decreases transcription factor-DNA binding element complex formation
    Zhang, XB
    Kiechle, FL
    ARCHIVES OF PATHOLOGY & LABORATORY MEDICINE, 2004, 128 (12) : 1364 - 1371
  • [35] Short, but matters: short tandem repeats confer variation in transcription factor-DNA binding
    Zhang, Jing
    Zhu, Bing
    SCIENCE BULLETIN, 2024, 69 (01) : 9 - 10
  • [36] THE ROLE OF DYNAMICS IN TRANSCRIPTION FACTOR DNA-BINDING SPECIFICITY
    Scheu, Karlton
    De, Soymya
    McIntosh, Lawrence
    PROTEIN SCIENCE, 2019, 28 : 123 - 124
  • [37] New View on Information Processing with pH Dynamics Regulating Transcription Factor-DNA Binding Selectivity
    Kisor, K.
    Barber, D. L.
    MOLECULAR BIOLOGY OF THE CELL, 2023, 34 (02) : 710 - 710
  • [38] True equilibrium measurement of transcription factor-DNA binding affinities using automated polarization microscopy
    Jung, Christophe
    Bandilla, Peter
    von Reutern, Marc
    Schnepf, Max
    Rieder, Susanne
    Unnerstall, Ulrich
    Gaul, Ulrike
    NATURE COMMUNICATIONS, 2018, 9
  • [39] True equilibrium measurement of transcription factor-DNA binding affinities using automated polarization microscopy
    Christophe Jung
    Peter Bandilla
    Marc von Reutern
    Max Schnepf
    Susanne Rieder
    Ulrich Unnerstall
    Ulrike Gaul
    Nature Communications, 9
  • [40] Regulation of gene expression by DNA binding Py-Im polyamides: Targeting transcription factor-DNA interfaces
    Dervan, Peter B.
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 243