Virtual screening, ADMET profiling, molecular docking and dynamics approaches to search for potent selective natural molecules based inhibitors against metallothionein-III to study Alzheimer's disease

被引:28
|
作者
Roy, Sudeep [1 ]
Kumar, Akhil [2 ]
Baig, Mohd Hassan [3 ]
Masarik, Michal [4 ]
Provaznik, Ivo [5 ,6 ]
机构
[1] Brno Univ Technol, Fac Elect Engn & Commun, Dept Biomed Engn, Tech 12, Brno 61200, Czech Republic
[2] CSIR, Div Biotechnol, Cent Inst Med & Aromat Plants, Lucknow 226015, Uttar Pradesh, India
[3] Yeungnam Univ, Sch Biotechnol, Kyongsan 712749, South Korea
[4] Masaryk Univ, Fac Med, Dept Pathol Physiol, Brno 62500, Czech Republic
[5] Brno Univ Technol, Int Clin Res Ctr, Ctr Biomed Engn, St Annes Univ Hosp Brno, Brno 61200, Czech Republic
[6] Brno Univ Technol, Dept Biomed Engn, FEEC, Brno 61200, Czech Republic
关键词
Alzheimer's disease; Metallothionein-III; Virtual screening; ADMET; Molecular dynamics; IN-SILICO; AQUEOUS SOLUBILITY; PREDICTION; BRAIN; BINDING; CLASSIFICATION; PENETRATION; ABSORPTION; SIMULATION; MODELS;
D O I
10.1016/j.ymeth.2015.04.021
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Motivation: Metallothionein-III (MT-III) displays neuro-inhibitory activity and is involved in the repair of neuronal damage. An altered expression level of MT-III suggests that it could be a mitigating factor in Alzheimer's disease (AD) neuronal dysfunction. Currently there are limited marketed drugs available against MT-III. The inhibitors are mostly pseudo-peptide based with limited ADMET. In our present study, available database InterBioScreen (natural compounds) was screened out for MT-III. Pharmacodynamics and pharmacokinetic studies were performed. Molecular docking and simulations of top hit molecules were performed to study complex stability. Results: Study reveals potent selective molecules that interact and form hydrogen bonds with amino acids Ser-6 and Lys-22 are common to established melatonin inhibitors for MT-III. These include DMHMIO, MCA B and s27533 derivatives. The ADMET profiling was better with comparable interaction energy values. It includes properties like blood brain barrier, hepatotoxicity, druggability, mutagenicity and carcinogenicity. Molecular dynamics studies were performed to validate our findings. (C) 2015 Published by Elsevier Inc.
引用
收藏
页码:105 / 110
页数:6
相关论文
共 37 条
  • [21] Discovery of potent DNMT1 inhibitors against sickle cell disease using structural-based virtual screening, MM-GBSA and molecular dynamics simulation-based approaches
    Ala, Chandu
    Joshi, Renuka Parshuram
    Gupta, Pragya
    Ramalingam, Sivaprakash
    Sankaranarayanan, Murugesan
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (01): : 261 - 273
  • [22] 2D-QSAR, molecular docking and MD simulation based virtual screening of the herbal molecules against Alzheimer's disorder: an approach to predict CNS activity
    Thakur, Aman
    Sharma, Bhanu
    Parashar, Arun
    Sharma, Vivek
    Kumar, Ajay
    Mehta, Vineet
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024, 42 (01): : 148 - 162
  • [24] Molecular dynamics and structure-based virtual screening and identification of natural compounds as Wnt signaling modulators: possible therapeutics for Alzheimer's disease
    Manandhar, Suman
    Sankhe, Runali
    Priya, Keerthi
    Hari, Gangadhar
    Kumar, Harish B.
    Mehta, Chetan H.
    Nayak, Usha Y.
    Pai, K. Sreedhara Ranganath
    MOLECULAR DIVERSITY, 2022, 26 (05) : 2793 - 2811
  • [25] Molecular dynamics and structure-based virtual screening and identification of natural compounds as Wnt signaling modulators: possible therapeutics for Alzheimer’s disease
    Suman Manandhar
    Runali Sankhe
    Keerthi Priya
    Gangadhar Hari
    Harish Kumar B.
    Chetan H. Mehta
    Usha Y. Nayak
    K. Sreedhara Ranganath Pai
    Molecular Diversity, 2022, 26 : 2793 - 2811
  • [26] Structure-Based Virtual Screening, Docking, ADMET, Molecular Dynamics, and MM-PBSA Calculations for the Discovery of Potential Natural SARS-CoV-2 Helicase Inhibitors from the Traditional Chinese Medicine
    Metwaly, Ahmed M. M.
    Elwan, Alaa
    El-Attar, Abdul-Aziz M. M.
    Al-Rashood, Sara T. T.
    Eissa, Ibrahim H. H.
    JOURNAL OF CHEMISTRY, 2022, 2022
  • [27] Azo-based multifunctional molecules and their copper(II) complexes as potential inhibitors against Alzheimer's disease: XRD/Hirshfeld analysis/DFT/molecular docking/cytotoxicity
    Al-Sulami, Ahlam, I
    Basha, Maram T.
    Althagafy, Hanan S.
    Al-Zaydi, Khadijah M.
    Davaasuren, Bambar
    Al-Kaff, Nadia S.
    Said, Musa A.
    INORGANIC CHEMISTRY COMMUNICATIONS, 2022, 142
  • [28] Virtual structure-based docking and molecular dynamics of FDA-approved drugs for the identification of potential IKKB inhibitors possessing dopaminergic activity in Alzheimer's disease
    Gurram, Prasada Chowdari
    Satarker, Sairaj
    Nassar, Ajmal
    Mudgal, Jayesh
    Nampoothiri, Madhavan
    CHEMICAL PAPERS, 2023, 77 (04) : 1971 - 1988
  • [29] Virtual structure-based docking and molecular dynamics of FDA-approved drugs for the identification of potential IKKB inhibitors possessing dopaminergic activity in Alzheimer’s disease
    Prasada Chowdari Gurram
    Sairaj Satarker
    Ajmal Nassar
    Jayesh Mudgal
    Madhavan Nampoothiri
    Chemical Papers, 2023, 77 : 1971 - 1988
  • [30] Integrated pharmacophore-based virtual screening and molecular modeling approaches for the identification of sigma-2 receptor antagonists as novel therapeutics against Alzheimer's disease
    Jangra, Jatin
    Bajad, Nilesh Gajanan
    Kumar, Ashok
    Singh, Sushil Kumar
    JOURNAL OF BIOMOLECULAR STRUCTURE & DYNAMICS, 2024,