Modeling Vibrational Spectra of Ester Carbonyl Stretch in Water and DMSO Based on Molecular Dynamics Simulation

被引:14
|
作者
Fang, Bin [1 ]
Wang, Tianjun [2 ]
Chen, Xian [3 ]
Jin, Tan [1 ]
Zhang, Ruiting [1 ]
Zhuang, Wei [1 ]
机构
[1] Chinese Acad Sci, Dalian Inst Chem Phys, State Key Lab Mol React Dynam, Dalian 116023, Liaoning, Peoples R China
[2] ShanghaiTech Univ, Dept Chem, Shanghai 200031, Peoples R China
[3] Jilin Univ, Dept Phys, Minist Educ, Key Lab Phys & Technol Adv Batteries, Changchun 130012, Peoples R China
来源
JOURNAL OF PHYSICAL CHEMISTRY B | 2015年 / 119卷 / 38期
基金
中国国家自然科学基金;
关键词
ULTRAFAST INFRARED-SPECTROSCOPY; PARTICLE MESH EWALD; 2D IR SPECTROSCOPY; HYDROPHOBIC INTERACTIONS; N-METHYLACETAMIDE; AQUEOUS-SOLUTIONS; MECHANISM; PROBE; CHANNEL; MODES;
D O I
10.1021/acs.jpcb.5b06541
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
On the basis of molecular dynamics simulation, we model the ester carbonyl stretch FTIR signals of methyl acetate in D2O and DMSO. An ab initio map is constructed at the B3LYP/6-311++G** level to relate the carbonyl stretch frequency to the external electric field. Using this map, fluctuating Hamiltonian of the carbonyl stretch is constructed from the MD simulation trajectory. The IR spectra calculated based on this Hamiltonian are found to be in good agreement with the experiment. For methyl acetate in D2O, hydrogen bonding on alkoxy oxygen causes a blue shift of frequency, while that on carbonyl oxygen causes a red shift. Two peaks observed in FTIR signals originate from the balance of these two effects. Furthermore, in both D2O and DMSO solutions, correlations are found between the instantaneous electric field on C=O and the frequencies. Broader line width of the signal in D2O suggests a more inhomogeneous electric field distribution due to the complicated hydrogen-bonding environment.
引用
收藏
页码:12390 / 12396
页数:7
相关论文
共 50 条
  • [21] Vibrational spectra and molecular dynamics of hydrogen peroxide molecules at quartz/water interfaces
    Lv, Ye-qing
    Zheng, Shi-li
    Wang, Shao-na
    Yan, Wen-yi
    Zhang, Yi
    Du, Hao
    JOURNAL OF MOLECULAR STRUCTURE, 2016, 1113 : 70 - 78
  • [22] Relaxation dynamics and power spectra of liquid water: a molecular dynamics simulation study
    Prasad, Mahabir
    English, Niall J.
    Nath Chakraborty, Somendra
    MOLECULAR PHYSICS, 2020, 118 (16)
  • [23] Structure and Dynamics of Urea/Water Mixtures Investigated by Vibrational Spectroscopy and Molecular Dynamics Simulation
    Carr, J. K.
    Buchanan, L. E.
    Schmidt, J. R.
    Zanni, M. T.
    Skinner, J. L.
    JOURNAL OF PHYSICAL CHEMISTRY B, 2013, 117 (42): : 13291 - 13300
  • [24] Molecular dynamics simulation with the charge response kernel:: Vibrational spectra of liquid water and N-methylacetamide in aqueous solution
    Iuchi, S
    Morita, A
    Kato, S
    JOURNAL OF PHYSICAL CHEMISTRY B, 2002, 106 (13): : 3466 - 3476
  • [25] Molecular dynamics simulation of transport of water/DMSO and water/acetone mixtures through boron nitride nanotube
    Azamat, Jafar
    Sardroodi, Jaber Jahanbin
    Mansouri, Kalleh
    Poursoltani, Leila
    FLUID PHASE EQUILIBRIA, 2016, 425 : 230 - 236
  • [26] Vibrational frequency fluctuations of ionic vibrational probe in water: Theoretical study with molecular dynamics simulation
    Okuda, Masaki
    Higashi, Masahiro
    Ohta, Kaoru
    Saito, Shinji
    Tominaga, Keisuke
    CHEMICAL PHYSICS LETTERS, 2017, 683 : 547 - 552
  • [27] Vibrational spectra of methane hydrate by Molecular Dynamics
    Janeth Landin-Sandoval, Veronica
    Castillo-Borja, Florianne
    Ivan Bravo-Sanchez, Ulises
    Vazquez-Roman, Richart
    19TH EUROPEAN SYMPOSIUM ON COMPUTER AIDED PROCESS ENGINEERING, 2009, 26 : 87 - 92
  • [28] Simulation of vibrational spectra of polydichlorophosphazene by molecular dynamics calculations - A study of the relaxed and stretched polymer
    Dumont, D
    Bougeard, D
    COMPUTATIONAL AND THEORETICAL POLYMER SCIENCE, 1999, 9 (02): : 89 - 97
  • [29] Simulation of the vibrational spectra of organic liquids with combination of molecular dynamics and normal coordinate analysis
    Billes, F
    JOURNAL OF MOLECULAR STRUCTURE-THEOCHEM, 2002, 579 : 191 - 203
  • [30] MODELING VIBRATIONAL-SPECTRA OF AMINO-ACID SIDE-CHAINS IN PROTEINS - THE CARBONYL STRETCH FREQUENCY OF BURIED CARBOXYLIC RESIDUES
    DIOUMAEV, AK
    BRAIMAN, MS
    JOURNAL OF THE AMERICAN CHEMICAL SOCIETY, 1995, 117 (42) : 10572 - 10574