Molecular dynamics with multiple time scales: The selection of efficient reference system propagators

被引:108
|
作者
Stuart, SJ [1 ]
Zhou, RH [1 ]
Berne, BJ [1 ]
机构
[1] COLUMBIA UNIV,CTR BIOMOL SIMULAT,NEW YORK,NY 10027
来源
JOURNAL OF CHEMICAL PHYSICS | 1996年 / 105卷 / 04期
关键词
D O I
10.1063/1.472005
中图分类号
O64 [物理化学(理论化学)、化学物理学];
学科分类号
070304 ; 081704 ;
摘要
Several heuristic rules are developed to assist in the implementation of the reversible reference system propagator algorithm (rRESPA). This is done through the use of examples, illustrating the use of properly chosen rRESPA splits of various types, as well as the dangers associated with improperly chosen ones. It is concluded that a particle-based rRESPA split should be used only when there is a great disparity in particle masses, and that a force-based split should be used only when there is no persisting opposition between forces in the system which are integrated with different time steps. (C) 1996 American Institute of Physics.
引用
收藏
页码:1426 / 1436
页数:11
相关论文
共 50 条
  • [41] Multiple Time-Scales of Language Dynamics: An Example From Psycholinguistics
    Raczaszek-Leonardi, Joanna
    ECOLOGICAL PSYCHOLOGY, 2010, 22 (04) : 269 - 285
  • [42] Dynamics of ribonuclease H: Temperature dependence of motions on multiple time scales
    Mandel, AM
    Akke, M
    Palmer, AG
    BIOCHEMISTRY, 1996, 35 (50) : 16009 - 16023
  • [43] Dynamics of Spatial Distortions Reveal Multiple Time Scales of Motion Adaptation
    Roach, Neil W.
    McGraw, Paul V.
    JOURNAL OF NEUROPHYSIOLOGY, 2009, 102 (06) : 3619 - 3626
  • [44] Boxed Molecular Dynamics: Decorrelation Time Scales and the Kinetic Master Equation
    Glowacki, David R.
    Paci, Emanuele
    Shalashilin, Dmitrii V.
    JOURNAL OF CHEMICAL THEORY AND COMPUTATION, 2011, 7 (05) : 1244 - 1252
  • [45] Compressed Air Energy Storage System for Multiple Time Scales
    Wen, Xiankui
    Yang, Dahu
    Zhong, Jingliang
    Feng, Tingyong
    Chen, Dunhui
    Yang, Tao
    Zeng, Peng
    PROCEEDINGS OF THE 3RD INTERNATIONAL SYMPOSIUM ON NEW ENERGY AND ELECTRICAL TECHNOLOGY, 2023, 1017 : 324 - 331
  • [46] Extending the Time Scales of Nonadiabatic Molecular Dynamics via Machine Learning in the Time Domain
    Akimov, Alexey, V
    JOURNAL OF PHYSICAL CHEMISTRY LETTERS, 2021, 12 (50): : 12119 - 12128
  • [47] Spanning multiple time-scales in ion channel dynamics by atomistic molecular simulations combined with electrodiffusion theory.
    Kurnikova, M
    Mamonov, A
    Nitzan, A
    Coalson, RD
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2003, 225 : U467 - U467
  • [48] Efficient Stochastic Simulation of Systems with Multiple Time Scales via Statistical Abstraction
    Bortolussi, Luca
    Milios, Dimitrios
    Sanguinetti, Guido
    COMPUTATIONAL METHODS IN SYSTEMS BIOLOGY, CMSB 2015, 2015, 9308 : 40 - 51
  • [49] Analysis and Research on Chaotic Dynamics of Evaporation Duct Height Time Series with Multiple Time Scales
    Zhang, Qi
    Chen, Xi
    Yin, Fuyu
    Hong, Fei
    ATMOSPHERE, 2022, 13 (12)
  • [50] Dynamics of the sensory response to urethral flow over multiple time scales in rat
    Danziger, Zachary C.
    Grill, Warren M.
    JOURNAL OF PHYSIOLOGY-LONDON, 2015, 593 (15): : 3351 - 3371