Ten simple rules to increase computational skills among biologists with Code Clubs

被引:8
|
作者
Hagan, Ada K. [1 ,5 ]
Lesniak, Nicholas A. [1 ]
Balunas, Marcy J. [2 ]
Bishop, Lucas [1 ]
Close, William L. [1 ]
Doherty, Matthew D. [1 ]
Elmore, Amanda G. [1 ]
Flynn, Kaitlin J. [1 ,6 ]
Hannigan, Geoffrey D. [1 ,7 ]
Koumpouras, Charlie C. [1 ,8 ]
Jenior, Matthew L. [1 ,9 ]
Kozik, Ariangela J. [3 ]
McBride, Kathryn [1 ]
Rifkin, Samara B. [3 ]
Stough, Joshua M. A. [1 ]
Sovacool, Kelly L. [4 ]
Sze, Marc A. [1 ,10 ]
Tomkovich, Sarah [1 ]
Topcuoglu, Begum D. [1 ,7 ]
Schloss, Patrick D. [1 ]
机构
[1] Univ Michigan, Dept Microbiol & Immunol, Ann Arbor, MI 48109 USA
[2] Univ Connecticut, Dept Pharmaceut Sci, Div Med Chem, Storrs, CT USA
[3] Univ Michigan, Dept Internal Med, Ann Arbor, MI 48109 USA
[4] Univ Michigan, Dept Computat Med & Bioinformat, Ann Arbor, MI 48109 USA
[5] Alliance SciComm & Consulting, Linden, MI USA
[6] Benaroya Res Inst, Seattle, WA USA
[7] Merck & Co Inc, Exploratory Sci Ctr, Cambridge, MA USA
[8] Roche Diagnost, Clin Operat Serv & eSyst, Indianapolis, IN USA
[9] Univ Virginia, Dept Biomed Engn, Charlottesville, VA USA
[10] Merck & Co Inc, Genom & Pharmacogen, Cambridge, MA USA
基金
美国国家卫生研究院;
关键词
RETRIEVAL;
D O I
10.1371/journal.pcbi.1008119
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
For most biologists, the ability to generate data has outpaced the ability to analyze those data. High throughput data comes to us from DNA and RNA sequencing, flow cytometry, metabolomics, molecular screens, and more. Although some accept the approach of compartmentalizing data generation and data analysis, we have found scientists feel empowered when they can both ask and answer their own biological questions [1]. In our experience performing microbiome research, it is more common to find exceptional bench scientists who are inexperienced at analyzing large data sets than to find the reverse. Of course, this raises a challenge: how do we train bench scientists to effectively answer biological questions with these larger data sets? Copyright: © 2020 Hagan et al. This is an open access article distributed under the terms of the Creative Commons Attribution License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original author and source are credited.
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页数:7
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