Ten Simple Rules for Reproducible Computational Research

被引：407
|
作者：
Sandve, Geir Kjetil [1 ,2 ]
Nekrutenko, Anton [3 ,4 ]
Taylor, James [5 ,6 ]
Hovig, Eivind [1 ,7 ,8 ]
机构：
[1] Univ Oslo, Dept Informat, N-0316 Oslo, Norway
[2] Univ Oslo, Ctr Canc Biomed, Oslo, Norway
[3] Penn State Univ, Dept Biochem & Mol Biol, University Pk, PA 16802 USA
[4] Penn State Univ, Huck Inst Life Sci, University Pk, PA 16802 USA
[5] Emory Univ, Dept Biol, Atlanta, GA 30322 USA
[6] Emory Univ, Dept Math & Comp Sci, Atlanta, GA 30322 USA
[7] Oslo Univ Hosp, Norwegian Radium Hosp, Inst Canc Res, Dept Tumor Biol, Oslo, Norway
[8] Oslo Univ Hosp, Norwegian Radium Hosp, Inst Med Informat, Oslo, Norway
来源：
PLOS COMPUTATIONAL BIOLOGY | 2013年 / 9卷 / 10期
基金：
美国国家科学基金会;
关键词：
GENE-EXPRESSION; REPOSITORY; STANDARDS; GALAXY;
D O I：
10.1371/journal.pcbi.1003285
中图分类号：
Q5 [生物化学];
学科分类号：
071010 ; 081704 ;
摘要：
引用
收藏
页数：4
相关论文
共 50 条
  • [1] Ten Simple Rules for Effective Computational Research
    Osborne, James M.
    Bernabeu, Miguel O.
    Bruna, Maria
    Calderhead, Ben
    Cooper, Jonathan
    Dalchau, Neil
    Dunn, Sara-Jane
    Fletcher, Alexander G.
    Freeman, Robin
    Groen, Derek
    Knapp, Bernhard
    McInerny, Greg J.
    Mirams, Gary R.
    Pitt-Francis, Joe
    Sengupta, Biswa
    Wright, David W.
    Yates, Christian A.
    Gavaghan, David J.
    Emmott, Stephen
    Deane, Charlotte
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (03)
  • [2] Ten Simple Rules for Reducing Overoptimistic Reporting in Methodological Computational Research
    Boulesteix, Anne-Laure
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (04)
  • [3] Ten simple rules for writing Dockerfiles for reproducible data science
    Nust, Daniel
    Sochat, Vanessa
    Marwick, Ben
    Eglen, Stephen J.
    Head, Tim
    Hirst, Tony
    Evans, Benjamin D.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2020, 16 (11)
  • [4] Ten Simple Rules for a Community Computational Challenge
    Friedberg, Iddo
    Wass, Mark N.
    Mooney, Sean D.
    Radivojac, Predrag
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (04)
  • [5] Ten simple rules for implementing open and reproducible research practices after attending a training course
    Heise, Verena
    Holman, Constance
    Lo, Hung
    Lyras, Ekaterini Maria
    Adkins, Mark Christopher
    Aquino, Maria Raisa Jessica
    Bougioukas, Konstantinos I.
    Bray, Katherine O.
    Gajos, Martyna
    Guo, Xuanzong
    Hartling, Corinna
    Huerta-Gutierrez, Rodrigo
    Jindrova, Miroslava
    Kenney, Joanne P. M.
    Kepinska, Adrianna P.
    Kneller, Laura
    Lopez-Rodriguez, Elena
    Muehlensiepen, Felix
    Richards, Angela
    Richards, Gareth
    Siebert, Maximilian
    Smith, James A.
    Smith, Natalie
    Stransky, Nicolai
    Tarvainen, Sirpa
    Valdes, Daniela Sofia
    Warrington, Kayleigh L.
    Wilpert, Nina-Maria
    Witkowska, Disa
    Zaneva, Mirela
    Zanker, Jeanette
    Weissgerber, Tracey L.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (01)
  • [6] Ten simple rules for defining a computational biology project
    Noble, William Stafford
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2023, 19 (01)
  • [7] Ten simple rules for the computational modeling of behavioral data
    Wilson, Robert C.
    Collins, Anne G. E.
    [J]. ELIFE, 2019, 8
  • [8] Ten Simple Rules for Protecting Research Integrity
    Shaw, David M.
    Erren, Thomas C.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2015, 11 (10)
  • [9] Ten Simple Rules for Writing Research Papers
    Zhang, Weixiong
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2014, 10 (01)
  • [10] Ten simple rules for innovative dissemination of research
    Ross-Hellauer, Tony
    Tennant, Jonathan P.
    Banelyte, Vilte
    Gorogh, Edit
    Luzi, Daniela
    Kraker, Peter
    Pisacane, Lucio
    Ruggieri, Roberta
    Sifacaki, Electra
    Vignoli, Michela
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2020, 16 (04)
12345