Use of ANOVA in Analysis of DNA Microarray Data

被引:0
|
作者
Borah, Samarjeet [1 ]
Ghose, M. K. [1 ]
机构
[1] Sikkim Manipal Inst Technol, Dept Comp Sci & Engn, Rangpo, E Sikkim, India
关键词
Microarray; ANOVA; variance analysis; Microarray Data;
D O I
暂无
中图分类号
Q81 [生物工程学(生物技术)]; Q93 [微生物学];
学科分类号
071005 ; 0836 ; 090102 ; 100705 ;
摘要
The expression levels of thousands of genes, possibly all genes in an organism, can be measured simultaneously in a single experiment using microarrays. This new technology gives rise to a challenge: to interpret the meaning of this huge amount of biological information formatted in numerical matrices. To meet the challenge., various methods have been developed using both traditional and innovative techniques to extract, analyze and visualize gene expression data generated from DNA microarrays. In this paper an attempt has been made to study the use of Analysis of Variance (ANOVA) in analysing DNA microarray data. Some of the well-known Gene expressions analysis algorithms based on ANOVA are also reviewed to highlight the future scope of research in this field.
引用
收藏
页码:460 / 463
页数:4
相关论文
共 50 条
  • [1] Robust ANOVA for microarray data
    de Haan, J. R.
    Bauerschmidt, S.
    van Schaik, R. C.
    Piek, E.
    Buydens, L. M. C.
    Wehrens, R.
    [J]. CHEMOMETRICS AND INTELLIGENT LABORATORY SYSTEMS, 2009, 98 (01) : 38 - 44
  • [2] Using ANOVA to analyze microarray data
    Churchill, GA
    [J]. BIOTECHNIQUES, 2004, 37 (02) : 173 - +
  • [3] Analysis of DNA microarray data
    Hackl, H
    Cabo, FS
    Sturn, A
    Wolkenhauer, O
    Trajanoski, Z
    [J]. CURRENT TOPICS IN MEDICINAL CHEMISTRY, 2004, 4 (13) : 1357 - 1370
  • [4] The use and analysis of microarray data
    Atul Butte
    [J]. Nature Reviews Drug Discovery, 2002, 1 : 951 - 960
  • [5] The use and analysis of microarray data
    Butte, A
    [J]. NATURE REVIEWS DRUG DISCOVERY, 2002, 1 (12) : 951 - 960
  • [6] Analysis of DNA microarray expression data
    Simon, Richard
    [J]. BEST PRACTICE & RESEARCH CLINICAL HAEMATOLOGY, 2009, 22 (02) : 271 - 282
  • [7] Interpretation of ANOVA models for microarray data using PCA
    de Haan, J. R.
    Wehrens, R.
    Bauerschmidt, S.
    Piek, E.
    van Schaik, R. C.
    Buydens, L. M. C.
    [J]. BIOINFORMATICS, 2007, 23 (02) : 184 - 190
  • [8] GenePublisher: automated analysis of DNA microarray data
    Knudsen, S
    Workman, C
    Sicheritz-Ponten, T
    Friis, C
    [J]. NUCLEIC ACIDS RESEARCH, 2003, 31 (13) : 3471 - 3476
  • [9] Metric learning for DNA microarray data analysis
    Takeuchi, Ichiro
    Nakagawa, Masao
    Seto, Masao
    [J]. INTERNATIONAL WORKSHOP ON STATISTICAL-MECHANICAL INFORMATICS 2009 (IW-SMI 2009), 2009, 197
  • [10] Fuzzy Biclustering for DNA Microarray Data Analysis
    Han, Lixin
    Yan, Hong
    [J]. 2008 IEEE INTERNATIONAL CONFERENCE ON FUZZY SYSTEMS, VOLS 1-5, 2008, : 1134 - +