Combining molecular dynamics simulations and transition state theory to evaluate the sorption rate constants for decanol at the surface of water

被引:25
|
作者
Shin, JY [1 ]
Abbott, NL [1 ]
机构
[1] Univ Wisconsin, Dept Chem Engn, Madison, WI 53706 USA
关键词
D O I
10.1021/la0106891
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
Molecular dynamics simulation of a decanol molecule near the surface of water is used to investigate T the adsorption and desorption kinetics of decanol at the interface. The decanol molecule, modeled using the OPLS potential functions, is simulated in a film consisting of 700 SPC/E water molecules. The change in potential of mean force (PMF) during transfer of decanol from the bulk of the aqueous phase to the air/water interface is calculated to be -9.5 kcal/mol. In addition, the PMF reveals the existence of an activation free energy barrier of 2.1 kcal/mol for the adsorption process, The orientational distribution function for decanol and the concentration profiles of the atoms within the molecule reveal that decanol is constrained in its average orientation as it inserts itself onto the surface of water. At the peak of the activation barrier, decanol is, on average, constrained to lie parallel to the surface due to an effective repulsion between the decanol and near-surface water molecules. By using transition state theory and the PMF, we calculate a desorption rate constant of 9.7 x 10(2) s(-1). Fluctuations in the interactions of the decanol with the water, however, lead to a recrossing of the activation free energy barrier, thus resulting in a substantial reduction in the overall desorption rate. A value of 0.046 was calculated for the Grote-Hynes transmission coefficient. The overall desorption rate is calculated to be 45 s(-1), in surprisingly good agreement with experimental estimates (12-220 s(-1)). The adsorption rate constant is calculated to be 3.4 x 10(8) s(-1).
引用
收藏
页码:8434 / 8443
页数:10
相关论文
共 50 条
  • [41] Microcanonical transition state theory rate coefficients from thermal rate constants via inverse Laplace transformation
    Venkatesh, PK
    Carr, RW
    Cohen, MH
    Dean, AM
    [J]. JOURNAL OF PHYSICAL CHEMISTRY A, 1998, 102 (42): : 8104 - 8115
  • [42] Microcanonical transition state theory rate coefficients from thermal rate constants via inverse Laplace transformation
    Venkatesh, PK
    Carr, RW
    Cohen, MH
    Dean, AM
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1999, 217 : U381 - U382
  • [43] Using simulation of simulations to evaluate and improve Reservoir Replica Exchange methods through transition state theory
    Okur, Asim
    Smith, Daniel
    Brooks, Bernard R.
    [J]. ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2012, 244
  • [44] Rate constants of chemical reactions from semiclassical transition state theory in full and one dimension
    Greene, Samuel M.
    Shan, Xiao
    Clary, David C.
    [J]. JOURNAL OF CHEMICAL PHYSICS, 2016, 144 (24):
  • [45] Calculating rate constants with updated Hessians using variational transition state theory with multidimensional tunneling
    Chuang, Yao-Yuan
    [J]. JOURNAL OF COMPUTATIONAL CHEMISTRY, 2007, 28 (11) : 1809 - 1816
  • [46] Molecular dynamics simulations of a silver atom in water: Evidence for a dipolar excitonic state
    Spezia, R
    Nicolas, C
    Boutin, A
    Vuilleumier, R
    [J]. PHYSICAL REVIEW LETTERS, 2003, 91 (20)
  • [47] The flow state analysis of water confined in slit pore by molecular dynamics simulations
    Wang, Yao
    Huang, Liqin
    [J]. PROCEEDINGS OF THE 2016 INTERNATIONAL CONFERENCE ON CIVIL, TRANSPORTATION AND ENVIRONMENT, 2016, 78 : 1267 - 1272
  • [48] COMPARISON OF CANONICAL VARIATIONAL TRANSITION-STATE THEORY RATE CONSTANTS FOR H ATOM ASSOCIATION WITH ALKYL RADICALS AND WITH THE (111) SURFACE OF DIAMOND
    BARBARAT, P
    ACCARY, C
    HASE, WL
    [J]. JOURNAL OF PHYSICAL CHEMISTRY, 1993, 97 (45): : 11706 - 11711
  • [49] Structured Pathway across the Transition State for Peptide Folding Revealed by Molecular Dynamics Simulations
    Thukral, Lipi
    Daidone, Isabella
    Smith, Jeremy C.
    [J]. PLOS COMPUTATIONAL BIOLOGY, 2011, 7 (09)
  • [50] Transition Pathways of Proteins Explored by Combining Molecular Dynamics Simulations and Monte Carlo Sampling of Collective Modes
    Gur, Mert
    Madura, Jeffry
    Bahar, Ivet
    [J]. BIOPHYSICAL JOURNAL, 2012, 102 (03) : 450A - 450A