free energy;
Hermitian matrix model;
random matrix theory;
RNA complex;
D O I:
10.1042/BST20120270
中图分类号:
Q5 [生物化学];
Q7 [分子生物学];
学科分类号:
071010 ;
081704 ;
摘要:
In the present article, we review a derivation of the numbers of RNA complexes of an arbitrary topology. These numbers are encoded in the free energy of the Hermitian matrix model with potential V(x)=x(2)/2 - stx/(1 - tx), where s and t are respective generating parameters for the number of RNA molecules and hydrogen bonds in a given complex. The free energies of this matrix model are computed using the so-called topological recursion, which is a powerful new formalism arising from random matrix theory. These numbers of RNA complexes also have profound meaning in mathematics: they provide the number of chord diagrams of fixed genus with specified numbers of backbones and chords as well as the number of cells in Riemann's moduli spaces for bordered surfaces of fixed topological type.
机构:
Nankai Univ, Sch Phys, Tianjin 300071, Peoples R ChinaNankai Univ, Sch Phys, Tianjin 300071, Peoples R China
Majarshin, A. J.
Luo, Yan-An
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机构:
Nankai Univ, Sch Phys, Tianjin 300071, Peoples R ChinaNankai Univ, Sch Phys, Tianjin 300071, Peoples R China
Luo, Yan-An
Pan, Feng
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机构:
Liaoning Normal Univ, Dept Phys, Dalian 116029, Peoples R China
Louisiana State Univ, Dept Phys & Astron, Baton Rouge, LA 70803 USANankai Univ, Sch Phys, Tianjin 300071, Peoples R China
Pan, Feng
Draayer, Jerry P.
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机构:
Louisiana State Univ, Dept Phys & Astron, Baton Rouge, LA 70803 USANankai Univ, Sch Phys, Tianjin 300071, Peoples R China