Insights into the mechanism of X-ray-induced disulfide-bond cleavage in lysozyme crystals based on EPR, optical absorption and X-ray diffraction studies

被引:53
|
作者
Sutton, Kristin A. [1 ]
Black, Paul J. [2 ]
Mercer, Kermit R. [2 ]
Garman, Elspeth F. [3 ]
Owen, Robin L. [4 ]
Snell, Edward H. [1 ,5 ]
Bernhard, William A. [2 ]
机构
[1] Hauptman Woodward Med Res Inst, Buffalo, NY 14086 USA
[2] Univ Rochester, Med Ctr, Rochester, NY 14642 USA
[3] Univ Oxford, Dept Biochem, Lab Mol Biophys, Oxford OX1 3QU, Oxon, England
[4] Diamond Light Source, Didcot OX11 0DE, Oxon, England
[5] SUNY Buffalo, Dept Biol Struct, Sch Med, Buffalo, NY 14203 USA
基金
美国国家卫生研究院;
关键词
RADIATION-DAMAGE; MACROMOLECULAR CRYSTALS; PROTEIN CRYSTALS; DATA-COLLECTION; RADICALS; DEPENDENCE; REDUCTION; ICE; IRRADIATION; SYSTEM;
D O I
10.1107/S0907444913022117
中图分类号
Q5 [生物化学];
学科分类号
071010 ; 081704 ;
摘要
Electron paramagnetic resonance (EPR) and online UV-visible absorption microspectrophotometry with X-ray crystallography have been used in a complementary manner to follow X-ray-induced disulfide-bond cleavage. Online UV-visible spectroscopy showed that upon X-irradiation, disulfide radicalization appeared to saturate at an absorbed dose of approximately 0.5-0.8 MGy, in contrast to the saturating dose of similar to 0.2 MGy observed using EPR at much lower dose rates. The observations suggest that a multi-track model involving product formation owing to the interaction of two separate tracks is a valid model for radiation damage in protein crystals. The saturation levels are remarkably consistent given the widely different experimental parameters and the range of total absorbed doses studied. The results indicate that even at the lowest doses used for structural investigations disulfide bonds are already radicalized. Multi-track considerations offer the first step in a comprehensive model of radiation damage that could potentially lead to a combined computational and experimental approach to identifying when damage is likely to be present, to quantitate it and to provide the ability to recover the native unperturbed structure.
引用
收藏
页码:2381 / 2394
页数:14
相关论文
共 50 条
  • [1] X-ray induced disulfide bond cleavage studied with EPR, optical absorption, and X-ray diffraction
    Snell, Edward H.
    Sutton, Kristin A.
    Black, Paul
    Mercer, Kermit R.
    Garman, Elspeth F.
    Owen, Robin L.
    Bernhard, William A.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2013, 69 : S405 - S405
  • [2] X-ray induced disulfide bond cleavage studied with EPR, optical absorption, and X-ray diffraction.
    Snell, Edward H.
    Sutton, Kristin A.
    Black, Paul
    Mercer, Kermit R.
    Garmanc, Elspeth F.
    Owend, Robin L.
    Bernhard, William A.
    ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2013, 69 : S86 - S86
  • [3] Compressibility of lysozyme protein crystals by X-ray diffraction
    Katrusiak, A
    Dauter, Z
    ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 1996, 52 : 607 - 608
  • [4] X-RAY STUDIES OF WATER IN CRYSTALS OF LYSOZYME
    BLAKE, CCF
    PULFORD, WCA
    ARTYMIUK, PJ
    JOURNAL OF MOLECULAR BIOLOGY, 1983, 167 (03) : 693 - 723
  • [5] X-RAY DIFFRACTION AND X-RAY ABSORPTION STUDIES OF IMMOBILIZED BONES
    ENGSTROM, A
    AMPRINO, R
    EXPERIENTIA, 1950, 6 (07): : 267 - 269
  • [6] X-RAY-INDUCED OPTICAL-ABSORPTION IN TETRACHLORIDES
    MARTIN, A
    LOPEZ, FJ
    DIEGUEZ, E
    AGULLOLOPEZ, F
    AREND, H
    CRYSTAL LATTICE DEFECTS AND AMORPHOUS MATERIALS, 1987, 17 (1-2): : 69 - 75
  • [7] X-RAY DIFFRACTION STUDIES OF RENNIN CRYSTALS
    BUNN, CW
    CAMERMAN, N
    TSAI, LT
    MOEWS, PC
    BAUMBER, ME
    PHILOSOPHICAL TRANSACTIONS OF THE ROYAL SOCIETY OF LONDON SERIES B-BIOLOGICAL SCIENCES, 1970, 257 (813) : 153 - &
  • [8] X-ray absorption and X-ray diffraction studies on molybdenum doped vanadium pentoxide
    Haass, F
    Adams, AH
    Buhrmester, T
    Schimanke, G
    Martin, M
    Fuess, H
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2003, 5 (19) : 4317 - 4324
  • [9] X-ray-induced photo-chemistry and X-ray absorption spectroscopy of biological samples
    George, Graham N.
    Pickering, Ingrid J.
    Pushie, M. Jake
    Nienaber, Kurt
    Hackett, Mark J.
    Ascone, Isabella
    Hedman, Britt
    Hodgson, Keith O.
    Aitken, Jade B.
    Levina, Aviva
    Glover, Christopher
    Lay, Peter A.
    JOURNAL OF SYNCHROTRON RADIATION, 2012, 19 : 875 - 886
  • [10] Triple-axis X-ray diffraction analyses of lysozyme crystals
    Volz, HM
    Matyi, RJ
    ACTA CRYSTALLOGRAPHICA SECTION D-BIOLOGICAL CRYSTALLOGRAPHY, 2000, 56 : 881 - 889