PyNX: high-performance computing toolkit for coherent X-ray imaging based on operators

被引:38
|
作者
Favre-Nicolin, Vincent [1 ,2 ]
Girard, Gaetan [1 ,3 ]
Leake, Steven [1 ]
Carnis, Jerome [4 ]
Chushkin, Yuriy [1 ]
Kieffer, Jerome [1 ]
Paleo, Pierre [1 ]
Richard, Marie-Ingrid [1 ,2 ,3 ]
机构
[1] European Synchrotron, ESRF, 71 Ave Martyrs, F-38000 Grenoble, France
[2] Univ Grenoble Alpes, Grenoble, France
[3] CEA, IRIG MEM, Nanostruct & Synchrotron Radiat Lab, F-38000 Grenoble, France
[4] DESY, D-22607 Hamburg, Germany
来源
JOURNAL OF APPLIED CRYSTALLOGRAPHY | 2020年 / 53卷 / 53期
关键词
coherent X-ray imaging; ptychography; coherent diffraction imaging; graphical processing units; PHASE; ALGORITHM; STRAIN; FIELD;
D O I
10.1107/S1600576720010985
中图分类号
O6 [化学];
学科分类号
0703 ;
摘要
The open-source PyNX toolkit has been extended to provide tools for coherent X-ray imaging data analysis and simulation. All calculations can be executed on graphical processing units (GPUs) to achieve high-performance computing speeds. The toolkit can be used for coherent diffraction imaging (CDI), ptychography and wavefront propagation, in the far- or near-field regime. Moreover, all imaging operations (propagation, projections, algorithm cycles...) can be implemented in Python as simple mathematical operators, an approach which can be used to easily combine basic algorithms in a tailored chain. Calculations can also be distributed to multiple GPUs, e.g. for large ptychography data sets. Command-line scripts are available for on-line CDI and ptychography analysis, either from raw beamline data sets or using the coherent X-ray imaging data format.
引用
收藏
页码:1404 / 1413
页数:10
相关论文
共 50 条
  • [11] Coherent lensless X-ray imaging
    Chapman, Henry N.
    Nugent, Keith A.
    [J]. NATURE PHOTONICS, 2010, 4 (12) : 833 - 839
  • [12] Coherent X-Ray Diffraction Imaging
    Miao, Jianwei
    Sandberg, Richard L.
    Song, Changyong
    [J]. IEEE JOURNAL OF SELECTED TOPICS IN QUANTUM ELECTRONICS, 2012, 18 (01) : 399 - 410
  • [13] Coherent lensless X-ray imaging
    Henry N. Chapman
    Keith A. Nugent
    [J]. Nature Photonics, 2010, 4 : 833 - 839
  • [14] Coherent diffractive imaging: A new tool for high resolution X-ray imaging
    Nugent, Keith A.
    Williams, Garth J.
    Abbey, Brian
    Peele, Andrew G.
    Pfeifer, Mark
    Clark, Jesse N.
    De Jonge, Martin
    McNulty, Ian
    [J]. ACTA CRYSTALLOGRAPHICA A-FOUNDATION AND ADVANCES, 2008, 64 : C129 - C129
  • [15] The FPGA High-Performance Computing Alliance Parallel Toolkit
    Baxter, Rob
    Booth, Stephen
    Bull, Mark
    Cawood, Geoff
    Perry, James
    Parsons, Mark
    Simpson, Alan
    Trew, Arthur
    McCormick, Andrew
    Smart, Graham
    Smart, Ronnie
    Cantle, Allan
    Chamberlain, Richard
    Genest, Gildas
    [J]. NASA/ESA CONFERENCE ON ADAPTIVE HARDWARE AND SYSTEMS, PROCEEDINGS, 2007, : 301 - +
  • [16] Two-Dimensional Perovskite Single Crystals for High-Performance X-ray Imaging and Exploring MeV X-ray Detection
    Xieming Xu
    Yiheng Wu
    Yi Zhang
    Xiaohui Li
    Fang Wang
    Xiaoming Jiang
    Shaofan Wu
    Shuaihua Wang
    [J]. Energy&EnvironmentalMaterials, 2024, 7 (01) : 143 - 150
  • [17] Two-Dimensional Perovskite Single Crystals for High-Performance X-ray Imaging and Exploring MeV X-ray Detection
    Xu, Xieming
    Wu, Yiheng
    Zhang, Yi
    Li, Xiaohui
    Wang, Fang
    Jiang, Xiaoming
    Wu, Shaofan
    Wang, Shuaihua
    [J]. ENERGY & ENVIRONMENTAL MATERIALS, 2024, 7 (01)
  • [18] High-Performance X-Ray Imaging using Lanthanide Metal-Organic Frameworks
    Zhang, Xintong
    Qiu, Haiyi
    Luo, Wang
    Huang, Kaofeng
    Chen, Ying
    Zhang, Jiacheng
    Wang, Bohan
    Peng, Daoling
    Wang, Yu
    Zheng, Kezhi
    [J]. ADVANCED SCIENCE, 2023, 10 (15)
  • [19] Highly efficient copper halide scintillators for high-performance and dynamic X-ray imaging
    Zhou, Quan
    Ren, Jiwei
    Xiao, Jiawen
    Lei, Lin
    Liao, Feiyi
    Di, Haipeng
    Wang, Chao
    Yang, Lijun
    Chen, Qi
    Yang, Xiaofang
    Zhao, Yiying
    Han, Xiaodong
    [J]. NANOSCALE, 2021, 13 (47) : 19864 - 19902
  • [20] HIGH-PERFORMANCE COMPOSITE ANODE FOR X-RAY TUBE
    NAKAGAWA, Y
    BABA, N
    SUWA, M
    [J]. JOURNAL OF METALS, 1988, 40 (07): : A31 - A31