Changing Range Bat Algorithm for RNA Secondary Structure Prediction

被引：2
|
作者：
Cui, Zhihua [1 ,3 ]
Cao, Yang [1 ]
Li, Feixiang [1 ]
Zhu, Zhuanghua [2 ]
机构：
[1] Taiyuan Univ Sci & Technol, Complex Syst & Computat Intelligence Lab, Taiyuan 030024, Shanxi, Peoples R China
[2] Shanxi Finance & Taxat Coll, Econ Informat Dept, Taiyuan 030024, Shanxi, Peoples R China
[3] Nanjing Univ, State Key Lab Novel Software Technol, Nanjing 210093, Jiangsu, Peoples R China
来源：
JOURNAL OF COMPUTATIONAL AND THEORETICAL NANOSCIENCE | 2015年 / 12卷 / 08期
基金：
中国国家自然科学基金;
关键词：
Bat Algorithm; RNA Secondary Structure; Changing Range Strategy; OPTIMIZATION;
D O I：
10.1166/jctn.2015.4215
中图分类号：
O6 [化学];
学科分类号：
0703 ;
摘要：
RNA secondary structure prediction is an active research topic for computational biology, and may evolutionary algorithms are applied to solve it. In this paper, a new variant of bat algorithm, changing range bat algorithm, is designed to solve it. This variant aims to mining the problem information behind the better individuals, and a changing range strategy is employed. To test the performance, the prediction of RNA secondary structure problem is selected to test. Simulation results show it is validity.
引用
收藏
页码：1968 / 1971
页数：4
相关论文
共 50 条
  • [41] Load balancing algorithm in cluster-based RNA secondary structure prediction
    Tan, GM
    Feng, SZ
    Sun, NH
    ISPDC 2005: 4th International Symposium on Parallel and Distributed Computing, 2005, : 91 - 96
  • [42] RNAknot: A new algorithm for RNA secondary structure prediction based on genetic algorithm and GRASP method
    El Fatmi, Abdelhakim
    Bekri, M. Ali
    Benhlima, Said
    JOURNAL OF BIOINFORMATICS AND COMPUTATIONAL BIOLOGY, 2019, 17 (05)
  • [43] Computational Prediction of RNA Secondary Structure
    Moss, Walter N.
    LABORATORY METHODS IN ENZYMOLOGY: RNA, 2013, 530 : 3 - 65
  • [44] RNA secondary structure prediction.
    Mathews, DH
    Andre, T
    Kim, J
    Turner, DH
    Zuker, M
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 1997, 213 : 360 - COMP
  • [45] On the parallel prediction of the RNA secondary structure
    Almeida, F
    Andonov, R
    Moreno, LM
    Poirriez, V
    Pérez, M
    Rodriguez, C
    PARALLEL COMPUTING: SOFTWARE TECHNOLOGY, ALGORITHMS, ARCHITECTURES AND APPLICATIONS, 2004, 13 : 525 - 532
  • [46] Prediction of RNA secondary structure.
    Turner, DH
    Schroeder, SJ
    Burkard, ME
    Mathews, DH
    ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY, 2002, 223 : U468 - U468
  • [47] Revolutions in RNA secondary structure prediction
    Mathews, David H.
    JOURNAL OF MOLECULAR BIOLOGY, 2006, 359 (03) : 526 - 532
  • [48] RNA clustering and secondary structure prediction
    Hu, YJ
    METMBS '05: PROCEEDINGS OF THE 2005 INTERNATIONAL CONFERENCE ON MATHEMATICS AND ENGINEERING TECHNIQUES IN MEDICINE AND BIOLOGICAL SCIENCES, 2005, : 59 - 65
  • [49] RNA Sampler: a new sampling based algorithm for common RNA secondary structure prediction and structural alignment
    Xu, Xing
    Ji, Yongmei
    Stormo, Gary D.
    BIOINFORMATICS, 2007, 23 (15) : 1883 - 1891
  • [50] FPGA-oriented fine-grained algorithm for RNA secondary structure prediction
    Xu, Lin
    Li, Xiao-Min
    Tan, Guang-Ming
    Liu, Xin-Chun
    Bu, Dong-Bo
    Feng, Sheng-Zhong
    Sun, Ning-Hui
    Jisuanji Xuebao/Chinese Journal of Computers, 2006, 29 (02): : 233 - 238
12345