Effect of glycerol-water binary mixtures on the structure and dynamics of protein solutions

被引:13
|
作者
GhattyVenkataKrishna, Pavan K. [1 ]
Carri, Gustavo A. [2 ]
机构
[1] Oak Ridge Natl Lab, Computat Biol & Bioinformat Grp, Oak Ridge, TN 37830 USA
[2] Univ Akron, Inst Polymer Sci & Polymer Engn, Dept Polymer Sci, Akron, OH 44325 USA
来源
关键词
glycerol; biopreservation; protein dynamics; molecular dynamics; simulations; HYDROGEN-BOND DYNAMICS; BOMBYX-MORI; DIELECTRIC-RELAXATION; MICROSCOPIC INSIGHTS; ENZYMATIC PATHWAYS; NEUTRON-SCATTERING; DIAPAUSING EGG; STABILIZATION; MECHANISM; HYDRATION;
D O I
10.1080/07391102.2013.773562
中图分类号
Q5 [生物化学]; Q7 [分子生物学];
学科分类号
071010 ; 081704 ;
摘要
We have performed 20ns of fully atomistic molecular dynamics simulations of Hen Egg-White Lysozyme in 0, 10, 20, 30, and 100% by weight of glycerol in water to better understand the microscopic physics behind the bioprotection offered by glycerol to naturally occuring biological systems. The solvent exposure of protein surface residues changes when glycerol is introduced. The dynamic behavior of the protein, as quantified by the incoherent intermediate scattering function, shows a nonmonotonic dependence on glycerol content. The fluctuations of the protein residues with respect to each other were found to be similar in all water-containing solvents, but different from the pure glycerol case. The increase in the number of protein-glycerol hydrogen bonds in glycerol-water binary mixtures explains the slowing down of protein dynamics as the glycerol content increases. We also explored the dynamic behavior of the hydration layer. We show that the short length scale dynamics of this layer are insensitive to glycerol concentration. However, the long length scale behavior shows a significant dependence on glycerol content. We also provide insights into the behavior of bound and mobile water molecules.
引用
收藏
页码:424 / 437
页数:14
相关论文
共 50 条
  • [41] Orientational relaxation times of rhodamine 700 in glycerol-water mixtures
    Megens, M
    Sprik, R
    Wegdam, GH
    Lagendijk, A
    JOURNAL OF CHEMICAL PHYSICS, 1997, 107 (02): : 493 - 498
  • [42] Hydrogen Bonding and the Structural Properties of Glycerol-Water Mixtures with a Microwave Field: a Molecular Dynamics Study
    Liu, Ying
    Huang, Kama
    Zhou, Yanping
    Gou, Dezhi
    Shi, Hongxiao
    JOURNAL OF PHYSICAL CHEMISTRY B, 2021, 125 (29): : 8099 - 8106
  • [43] Effects of solvent concentration and composition on protein dynamics: 13C MAS NMR studies of elastin in glycerol-water mixtures
    Demuth, Dominik
    Haase, Nils
    Malzacher, Daniel
    Vogel, Michael
    BIOCHIMICA ET BIOPHYSICA ACTA-PROTEINS AND PROTEOMICS, 2015, 1854 (08): : 995 - 1000
  • [44] The effect of complex solvents on the structure and dynamics of protein solutions: The case of Lysozyme in trehalose/water mixtures
    GhattyVenkataKrishna, Pavan K.
    Carri, Gustavo A.
    EUROPEAN PHYSICAL JOURNAL E, 2013, 36 (02):
  • [45] The effect of complex solvents on the structure and dynamics of protein solutions: The case of Lysozyme in trehalose/water mixtures
    Pavan K. GhattyVenkataKrishna
    Gustavo A. Carri
    The European Physical Journal E, 2013, 36
  • [46] HEAT CAPACITIES OF GLYCEROL-WATER MIXTURES AND AQUEOUS SOLUTIONS OF AMMONIUM SULPHATE AMMONIUM NITRATE AND STRONTIUM NITRATE
    SUKHATME, SP
    SAIKHEDK.N
    INDIAN JOURNAL OF TECHNOLOGY, 1969, 7 (01): : 1 - &
  • [47] Binary Diffusion Coefficients of Glycerol-Water Mixtures for Temperatures from 323 to 448 K by Dynamic Light Scattering
    Rausch, Michael H.
    Heller, Andreas
    Froeba, Andreas P.
    JOURNAL OF CHEMICAL AND ENGINEERING DATA, 2017, 62 (12): : 4364 - 4370
  • [48] Growth and collapse of laser-induced bubbles in glycerol-water mixtures
    Liu Xiu-Mei
    He Jie
    Lu Jian
    Ni Xiao-Wu
    CHINESE PHYSICS B, 2008, 17 (07) : 2574 - 2579
  • [49] Growth and collapse of laser-induced bubbles in glycerol-water mixtures
    刘秀梅
    贺杰
    陆建
    倪晓武
    Chinese Physics B, 2008, 17 (07) : 2574 - 2579
  • [50] Glass polymorphism in glycerol-water mixtures: II. Experimental studies
    Bachler, Johannes
    Fuentes-Landete, Violeta
    Jahn, David A.
    Wong, Jessina
    Giovambattista, Nicolas
    Loerting, Thomas
    PHYSICAL CHEMISTRY CHEMICAL PHYSICS, 2016, 18 (16) : 11058 - 11068